View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229-Insertion-3 (Length: 680)
Name: NF5229-Insertion-3
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 6 - 680
Target Start/End: Original strand, 5103528 - 5104203
Alignment:
| Q |
6 |
caattggtgaagaagttattgacgagaaaatggagagta-gaaaactagcaatcattttgacaaagaggtaccagttgcagggaatcgagaatgccgaac |
104 |
Q |
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| T |
5103528 |
caattggtgaagaagttattgatgagaaaatggagagtaagaaaactagcaatcattttgacaaagaggtaccagttgcagggaatcgagaatgccgaac |
5103627 |
T |
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| Q |
105 |
acgcctcactacttcatggattggattggattgtccatttgagtcttagtggtgatcatgctgtctcatggattcttttctgcatgtagaattctttgag |
204 |
Q |
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| T |
5103628 |
atgcctcactacttcatggatcggattggattgtccatttgagtcttagtggtgatcatgcagtctcctagattcctttctgcatgtagaattctttgag |
5103727 |
T |
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| Q |
205 |
ttttctttaccgtgttaaattagggaggtaatattcatatatttgatccacaatttccatatatgattctatttatgttgaaataatggctcaaaggcat |
304 |
Q |
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| T |
5103728 |
ttttctttaccatgttaaattagggaggtaatattcatatatttgatccacaagttccatatatgattctatttatgttgaaataatggctcaaaggcat |
5103827 |
T |
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| Q |
305 |
gtagagttctctgactttttcaccttttacaatctgtgcctgttattaacaattgttacaacaacccttacattccattgaggattagttctatattatt |
404 |
Q |
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| T |
5103828 |
gtagagttctttgactttttcaccttttacaatctgtgcctgttattaacaattgttacaacaacccttacattccattgaggattggttctatattatt |
5103927 |
T |
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| Q |
405 |
gctatttttgtcaaatcttaatgtccatgccttattatttgtgtcaacaaaacttccaggaacaggcactattgataccatcagtccagacatctcatcc |
504 |
Q |
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| T |
5103928 |
gctatttttgtcaaatcttaatgtccatgccttattatttgtgtcaacaaaacttccaggaacaggcactattgataccatcagtccagacatctcatcc |
5104027 |
T |
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| Q |
505 |
taataaacctaagaaaagtttagtatttgaacaaatttgtttctagtctaatgtccccaatactaaacaagaaaataaatgtaactaagcttatttccaa |
604 |
Q |
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| T |
5104028 |
taataaacctaagaaaagtttagtatttgaacaaatttgtttctaatctaatgtccccaatactaaacaagaaaataaatgtaactaagcttatttccaa |
5104127 |
T |
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| Q |
605 |
ccaactaaaaattaatgttttaaaaatcggatcagaagttgaaccagtgagacgagcgggtcatggttttaccaat |
680 |
Q |
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| T |
5104128 |
ccaactaaaaattaatgttttaaaaatcggatcagaagttgaaccagtgagacgagcaggtcatggtttaaccaat |
5104203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 513 - 672
Target Start/End: Original strand, 5107541 - 5107701
Alignment:
| Q |
513 |
ctaagaaaagttt-agtatttgaacaaatttgtttctagtctaatgtccccaatactaaacaagaaaataaa-tgtaactaagcttatttccaaccaact |
610 |
Q |
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| T |
5107541 |
ctaagaaaagttttagtatttaaacatatttgtttctcatctattgtcctgaatactaaacaagaaaataaaatgaaattaagcttatttccaaccaact |
5107640 |
T |
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| Q |
611 |
aaaaattaatgttttaaaaatcggatcagaagttgaaccagtgagacgagcgggtcatggtt |
672 |
Q |
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| T |
5107641 |
aaaaatcaatgtttgaaagatcagaccagaggttgaaccagtgagacgtg-gggtcatggtt |
5107701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 5095349 - 5095400
Alignment:
| Q |
31 |
gaaaatggagagtagaaaactagcaatcattttgacaaagaggtaccagttg |
82 |
Q |
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| T |
5095349 |
gaaaatggagagtagcaaactagcaatcactttgacaaagaggtaccagttg |
5095400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 2462169 - 2462120
Alignment:
| Q |
47 |
aaactagcaatcattttgacaaagaggtaccagttgcagggaatcgagaa |
96 |
Q |
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| T |
2462169 |
aaactagcaatcaaattgaagaagaggtaccagttgcagggaatggagaa |
2462120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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