View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229-Insertion-4 (Length: 675)
Name: NF5229-Insertion-4
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-4 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 103 - 675
Target Start/End: Complemental strand, 28418486 - 28417916
Alignment:
| Q |
103 |
aggcaatagtagaaactccaaaggctaagcatggagaggataacttgtaagagaagtcaagaggttttaatgatatttctaaaattaaactgaagttgtt |
202 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418486 |
aggcaatagtacaaactccaaaggctaagcatggagaggataacttgtaaaagaagtcaagaggttttaatgatatttctaaaattaaactgaagttgtt |
28418387 |
T |
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| Q |
203 |
tatatttggatcaatatgttttaccttggtcataaatnnnnnnnttctaagcaaaacaaaagagataacttgtaaaagaagtcaagagcatgatacaaat |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418386 |
tatatttggatcaatatgttttaccttggtcataaataaaaaaattctaagcaaaacaaaagagataacttgtaaaagaagtcaagagcatgatacaaat |
28418287 |
T |
|
| Q |
303 |
caacacactcttatttacagtttcatatnnnnnnngtaaatgtgtacaagagatcaagaacatgctactatccaaagcaacactctaaaagacaatgata |
402 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418286 |
caacacactcttatttacagtttcatataaaaaaagtcaatgtgtacaagagatcaagaacatgctactatccaaagcaacactctaaaagacaatgata |
28418187 |
T |
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| Q |
403 |
ttcttttgtttttcacagtcgttaaaacattcttcctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgaca |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
28418186 |
ttcttttgtttttcacagtcgttaaaacattcttcctaaacctcaccaacaatttatttatctttcagaatctttgaatc----ataaaagcttttgaca |
28418091 |
T |
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| Q |
503 |
gtggatgaaatggtagaaggatcagccatttctctc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatgg |
600 |
Q |
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| T |
28418090 |
gtggaggaaatggtagaaggatcagccatttctctcatattagtttgcatgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatga |
28417991 |
T |
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| Q |
601 |
agttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagt |
675 |
Q |
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| T |
28417990 |
agttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacgaacatcggcttctcgtagt |
28417916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 175 - 675
Target Start/End: Original strand, 28584797 - 28585318
Alignment:
| Q |
175 |
atatttctaaaattaaactgaagttgtttatatttggatcaatatgttttaccttggtcataaatnnnnnnn------ttctaagcaaaacaaaagagat |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
28584797 |
atatttctaaaattaaactgaagttgtttatatttggaccaa-atgttttacctcggtcataaaaaatataaagaaaattctaagcaaaacaaaagagat |
28584895 |
T |
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| Q |
269 |
aacttgtaaaagaagtcaagagcatgatacaaatcaacacactcttatttacagtttcatatnnnnnnngta----------------aatgtgtacaag |
352 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| ||||| |||| || ||||| |||||||| ||| |||||||||||| |
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| T |
28584896 |
aacttgtaaaagaagttaagagcatgctacaaagcaacaaactcatacttacattttcatatcaaaaaagtatacatgaacatattccaatgtgtacaag |
28584995 |
T |
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| Q |
353 |
agatcaa-gaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtc-gttaaaacattcttcctaaacctcacca |
450 |
Q |
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||||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28584996 |
agatcaaagagcatgctactatccaaagcaacactctagaagacaatgatattctcttgtttttcacagtccgttaaaacattcttcctaaacctcacca |
28585095 |
T |
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| Q |
451 |
acaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctcat--tagtttgc |
548 |
Q |
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| T |
28585096 |
acaatttatttatctttcaaaatctttgaatcata----aaagcttttgacggtcgaagaaatggtagaaggatcagccatttctctcatattagtttgc |
28585191 |
T |
|
| Q |
549 |
atgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatg |
648 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585192 |
atgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacatacaaccatccattgatg |
28585291 |
T |
|
| Q |
649 |
gtgcaacaaacatcggcttctcgtagt |
675 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
28585292 |
gtgcaacaaacatcggcttctcgtagt |
28585318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 341 - 675
Target Start/End: Complemental strand, 28404814 - 28404481
Alignment:
| Q |
341 |
aatgtgtacaagagatcaagaacatgc----tactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattctt |
436 |
Q |
| |
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|||||||||| |||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||| | |||| ||| || |
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| T |
28404814 |
aatgtgtacatgagatcaagagcatgcatgctactgtccaaagcaacactctaggagacaatgatattcttttgttttgtacaatggttataac---ttt |
28404718 |
T |
|
| Q |
437 |
cctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctc |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
28404717 |
cctaaacctcaccaacaatttatttatctttcagaatatttgaatc----ataaaagcttttgacggtcgaaaaaatggtagaaggatcagccatttctc |
28404622 |
T |
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| Q |
537 |
tc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacataca |
634 |
Q |
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|| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28404621 |
tcatatttgttggcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacataca |
28404522 |
T |
|
| Q |
635 |
accatccattgatggtgcaacaaacatcggcttctcgtagt |
675 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28404521 |
accatccattgatggtgcaacgaacatcggcttctcgtagt |
28404481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 487 - 675
Target Start/End: Original strand, 28580128 - 28580318
Alignment:
| Q |
487 |
ataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagc |
584 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||||| |||| | ||||||||||||| |
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| T |
28580128 |
ataaaagcttttgacattggaggaaatggtagaaggatctgccatttctctcatattagttggcatgtgttcaacaggttggataacagtaacaccaagc |
28580227 |
T |
|
| Q |
585 |
tcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagt |
675 |
Q |
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| |||||| ||||| | | |||||||||||||| ||||||||||| | ||| |||||| |||||||||||||||||||||||||||| |
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| T |
28580228 |
ttttcaatcctcatcaattgttgttctgtgaaaggatttctccacatggcatcattcattgacggtgcaacaaacatcggcttctcgtagt |
28580318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 28584698 - 28584791
Alignment:
| Q |
8 |
caatggcacaaaatccattgttcacaaaactagccacattcttggagtaaacctcaacaagaacagagggagtaaagagctggtaggaaaactt |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
28584698 |
caatggcacaaaatccattgttcacaaaactagccacatttttggagtaaacctcaacaagaacagagagagtaaagacctggtaggaaaactt |
28584791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 28418553 - 28418484
Alignment:
| Q |
8 |
caatggcacaaaatccattgttcacaaaactagccacattcttggagt-aaacctcaacaagaacagagg |
76 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
28418553 |
caatggcacaagattcattgttcacaaaactagccacattcgtggagtaaaacctcaacaagaacagagg |
28418484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 28404922 - 28404870
Alignment:
| Q |
249 |
ctaagcaaaacaaaagagataacttgtaaaagaagtcaagagcatgatacaaa |
301 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||||||| ||| |||||| |
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| T |
28404922 |
ctaagcaaaccaaaagagataacttgtaaaaggggtcaagagtatgctacaaa |
28404870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 642 - 675
Target Start/End: Original strand, 27834771 - 27834804
Alignment:
| Q |
642 |
attgatggtgcaacaaacatcggcttctcgtagt |
675 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
27834771 |
attgatggtgcaacaaacaccggcttctcgtagt |
27834804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 28405014 - 28404970
Alignment:
| Q |
163 |
gaggttttaatgatatttctaaaattaaactgaagttgtttatat |
207 |
Q |
| |
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||||||| |||||||||| |||||||||||| ||||| ||||||| |
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| T |
28405014 |
gaggtttcaatgatatttataaaattaaactaaagttatttatat |
28404970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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