View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229-Insertion-5 (Length: 574)
Name: NF5229-Insertion-5
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-5 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 170 - 574
Target Start/End: Original strand, 34851473 - 34851877
Alignment:
| Q |
170 |
tctcatcctttttcagccctcgtttaagtacctgagaaatttattatatccttcctagaaaaatattcaaatatcttgtaaatgatgagatctaatgaaa |
269 |
Q |
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| T |
34851473 |
tctcatcctttttaagccctcgtttaattacctgaggaatttattatatccttcctagaaaaatattcaaatatcttgtaaatgatgagatctaatgaaa |
34851572 |
T |
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| Q |
270 |
tgtttgaaacttacttaataactaaattaaattctaagaatattatgtcacgagttgactttataatttttattaagaatatgattcaaaatagccacta |
369 |
Q |
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| T |
34851573 |
tgtttgaaacttacttaataactaaattaaattctaagaatattatgtcacgagttgactttataatttttattaagaatatgattcaaaatagccacta |
34851672 |
T |
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| Q |
370 |
gaaagatgattgttattattcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactgg |
469 |
Q |
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| T |
34851673 |
gaaagatgattgttattattcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactgg |
34851772 |
T |
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| Q |
470 |
tgggaaggtaggactaggaaccataatttaatttattttggctaagaaaagttttcataattaaaaactagatattaaaatatggccactatcattagta |
569 |
Q |
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| T |
34851773 |
tgggaaggtaggactaggaaccataatttaatttattttggctaagaaaagttttcataattaaaaactagatattaaaaaatggccactatcattagta |
34851872 |
T |
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| Q |
570 |
ttatg |
574 |
Q |
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| T |
34851873 |
ttatg |
34851877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 34851338 - 34851485
Alignment:
| Q |
7 |
aaatacttgtaccaattatcagaatgagacaatggaacctagctactacagctcttcaatctactatggtggtcaagaaaattattccccaagaaaaagg |
106 |
Q |
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| T |
34851338 |
aaatacttgtaccaattatcagaatgagacaatggaacctagctactacagctcttcaatctactatggtggtcaagaaaattattccccaagaaacagg |
34851437 |
T |
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| Q |
107 |
accactgaaccccaccatgttgtgagtgccatcattctcatccttttt |
154 |
Q |
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| T |
34851438 |
accactgaaccccaccatgttgtgagtgccatcattctcatccttttt |
34851485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 3511619 - 3511696
Alignment:
| Q |
199 |
acctgagaaatttattatatccttcctagaaaa-atattcaaatatcttgtaaatgatgagatctaatgaaatgtttg |
275 |
Q |
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| T |
3511619 |
acctgaggaatttattatatccttcctagaaaacatatacaaacatcttataaatggtgagatctaattaaatgtttg |
3511696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 400 - 479
Target Start/End: Complemental strand, 3651239 - 3651160
Alignment:
| Q |
400 |
gttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggta |
479 |
Q |
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| T |
3651239 |
gttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaacagcgcttcaagaggcgactggtggcaaggta |
3651160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 3652228 - 3652164
Alignment:
| Q |
15 |
gtaccaattatcagaatgagacaatggaacctagctactacagctcttcaatctactatggtggt |
79 |
Q |
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| T |
3652228 |
gtaccgattatcagaatgagacggtggaacccacctacttcagctcttcaatccactatggtggt |
3652164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 482
Target Start/End: Original strand, 3512532 - 3512626
Alignment:
| Q |
388 |
ttcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggtagga |
482 |
Q |
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| T |
3512532 |
ttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaacaatcctaacagtgcttcaaggggagactggtggctaggtagga |
3512626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 31120764 - 31120837
Alignment:
| Q |
21 |
attatcagaatgagacaatggaacctagc---tactacagctcttcaatctactatggtggtcaagaaaattat |
91 |
Q |
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| T |
31120764 |
attatcagaatgagacagtggagcccagtaattactacagttcctcaatctattatggtggtcaagaaaattat |
31120837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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