View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229-Insertion-9 (Length: 630)
Name: NF5229-Insertion-9
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 590
Target Start/End: Original strand, 32190002 - 32190589
Alignment:
| Q |
8 |
ttaataagacttcaaatcttattcttaaggccacatgcatgttttataaaagttattatgttcatagtaaccttaccggggtcccttttacaactgtaga |
107 |
Q |
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| T |
32190002 |
ttaataagacttcaaatcttattcttaaggccacatgcatgttttataaaagttattatgttcatagtaaccttaccggggtcccttttacaactgtaga |
32190101 |
T |
|
| Q |
108 |
tacatggccaggcaagttgccttcaatatctggaactggagctagtcttgaaagtccaaaatcagcaacttttgctatgaattttaagtctaataatatg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32190102 |
tacatggccaggcaagttgccttcaatatctggaactggagctagtcttgaaagtccaaaatcagcaacttttgctatgaattttgagtctaataatatg |
32190201 |
T |
|
| Q |
208 |
ttgctagctttgacatctctgtggaatattggaggatcagcttctgtgtgtagatagacaagacctttagctgaccctagagcaatcttcaatctcatgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32190202 |
ttgctagctttgacatctctgtggaatattggaggatcagcttctgtgtgtagatagacaagacctttagctgaccctagagcaatcttcaatctcatgg |
32190301 |
T |
|
| Q |
308 |
caaaactaagtggttctttagatttagctgtcataaaacattaactacaaagttataagagaaaacatagaaatccataatttttccatataatcaaata |
407 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32190302 |
caaaactaagcggttctttagatttagctgtcataaaacattaactacaaagttaaaagagaaaacatagaaatccataatttttctatataatcaaata |
32190401 |
T |
|
| Q |
408 |
tcatgattattttgtacttcagttatttttt-agatattgtagaagaggaa-ttattatttattaatgcgacactagtgattattttacaactgtttgtg |
505 |
Q |
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| T |
32190402 |
tcatgattattttgtacttcagttattttttaagatattgtagaagaggaagttattatttattaatgtgacactagtgattattttacaactgtttgtg |
32190501 |
T |
|
| Q |
506 |
aaggg-aatgaacttcgt-ccttgaggttataa-gtcaaactcttactattgagctgatacctagacgtttttctatttcatatagga |
590 |
Q |
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| T |
32190502 |
aagggaaatgaacttcgtcccttgaggttataaggtcaaactcttattattgagccgatacctagacgtttttctatttcatatagga |
32190589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 78 - 311
Target Start/End: Complemental strand, 28273931 - 28273698
Alignment:
| Q |
78 |
ccttaccggggtcccttttacaactgtagatacatggccaggcaagttgccttcaatatctggaactggagctagtcttgaaagtccaaaatcagcaact |
177 |
Q |
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| T |
28273931 |
ccttaccggtgttccctttaccacagtagatacatgaccaggaacaattccttccatatctggaactggtgcaagtcgtgaaagcccaaaatctgcaact |
28273832 |
T |
|
| Q |
178 |
tttgctatgaattttaagtctaataatatgttgctagctttgacatctctgtggaatattggaggatcagcttctgtgtgtagatagacaagacctttag |
277 |
Q |
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| T |
28273831 |
tttgcagtgaacttagagtccaataatatgttgctggatttaacatctcggtgaaatattggaggatcggcttctgtgtgtagatacatgagacctttag |
28273732 |
T |
|
| Q |
278 |
ctgaccctagagcaatcttcaatctcatggcaaa |
311 |
Q |
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| T |
28273731 |
ctgactctaatgctatcttcaatctcatagcaaa |
28273698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 78 - 306
Target Start/End: Complemental strand, 28288992 - 28288764
Alignment:
| Q |
78 |
ccttaccggggtcccttttacaactgtagatacatggccaggcaagttgccttcaatatctggaactggagctagtcttgaaagtccaaaatcagcaact |
177 |
Q |
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||||||||| || || ||||| || ||||||||||| ||||||| | ||||| |||||||||||||| || || | ||||||||| ||||| || ||| |
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| T |
28288992 |
ccttaccggtgtaccctttaccacagtagatacatgaccaggcacaattccttccatatctggaactggtgcaagccgtgaaagtccgaaatctgcgact |
28288893 |
T |
|
| Q |
178 |
tttgctatgaattttaagtctaataatatgttgctagctttgacatctctgtggaatattggaggatcagcttctgtgtgtagatagacaagacctttag |
277 |
Q |
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|| || || || | || |||||||||||||| || |||||||| | ||||||||||||||||| ||||| |||| ||||| | |||||||||| |
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| T |
28288892 |
ttagcagagagcttagaatccaataatatgttgctggccttgacatcacgatggaatattggaggatcggcttcattgtgcagatacatgagacctttag |
28288793 |
T |
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| Q |
278 |
ctgaccctagagcaatcttcaatctcatg |
306 |
Q |
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| ||||||| |||||||||||||||||| |
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| T |
28288792 |
ccgaccctaatgcaatcttcaatctcatg |
28288764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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