View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_high_14 (Length: 396)

Name: NF5229_high_14
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_high_14
NF5229_high_14
[»] chr8 (12 HSPs)
chr8 (10-352)||(192193-192535)
chr8 (10-352)||(719797-720139)
chr8 (10-352)||(880904-881246)
chr8 (10-162)||(192125-192274)
chr8 (10-162)||(719729-719878)
chr8 (10-162)||(880836-880985)
chr8 (72-162)||(192119-192206)
chr8 (72-162)||(719723-719810)
chr8 (72-162)||(880830-880917)
chr8 (82-163)||(192106-192187)
chr8 (82-163)||(719710-719791)
chr8 (82-163)||(880817-880898)
[»] chr3 (4 HSPs)
chr3 (10-352)||(51126318-51126660)
chr3 (10-162)||(51126579-51126728)
chr3 (72-162)||(51126647-51126734)
chr3 (82-163)||(51126666-51126747)
[»] chr2 (2 HSPs)
chr2 (228-340)||(14035651-14035764)
chr2 (205-340)||(13895004-13895137)
[»] chr4 (1 HSPs)
chr4 (254-352)||(24037149-24037250)
[»] chr5 (1 HSPs)
chr5 (240-340)||(33231494-33231594)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 192193 - 192535
Alignment:
Q  10 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 109  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  192193 ataattctgctatagttttctgtacataattctgttataattctttacataattctgctatactgtacataattctgctatagttttctgtacataattc 192292  T
Q  110 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgtacatatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  192293 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgtacatatgtt 192392  T
Q  210 ttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  192393 ttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaa 192492  T
Q  310 gaagatgatgacattttccaaaaagctatttatgtggctgcac 352  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  192493 gaagatgatgacattttccaaaaagctatttttgtggctgcac 192535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 719797 - 720139
Alignment:
Q  10 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 109  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  719797 ataattctgctatagttttctgtacataattctgttataattctttacataattctgctatactgtacataattctgctatagttttctgtacataattc 719896  T
Q  110 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgtacatatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719897 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgtacatatgtt 719996  T
Q  210 ttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719997 ttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaa 720096  T
Q  310 gaagatgatgacattttccaaaaagctatttatgtggctgcac 352  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  720097 gaagatgatgacattttccaaaaagctatttttgtggctgcac 720139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 880904 - 881246
Alignment:
Q  10 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 109  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  880904 ataattctgctatagttttctgtacataattctgttataattctttacataattctgctatactgtacataattctgctatagttttctgtacataattc 881003  T
Q  110 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgtacatatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  881004 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgtacatatgtt 881103  T
Q  210 ttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  881104 ttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaa 881203  T
Q  310 gaagatgatgacattttccaaaaagctatttatgtggctgcac 352  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  881204 gaagatgatgacattttccaaaaagctatttttgtggctgcac 881246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 192125 - 192274
Alignment:
Q  10 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  192125 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 192224  T
Q  110 tgttataattctgtacatcattctgctataattctttacataattctgctata 162  Q
    |||||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  192225 tgttataattctttacataattctgctata---ctgtacataattctgctata 192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 719729 - 719878
Alignment:
Q  10 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719729 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 719828  T
Q  110 tgttataattctgtacatcattctgctataattctttacataattctgctata 162  Q
    |||||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  719829 tgttataattctttacataattctgctata---ctgtacataattctgctata 719878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 880836 - 880985
Alignment:
Q  10 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  880836 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 880935  T
Q  110 tgttataattctgtacatcattctgctataattctttacataattctgctata 162  Q
    |||||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  880936 tgttataattctttacataattctgctata---ctgtacataattctgctata 880985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 192119 - 192206
Alignment:
Q  72 ctgtacataattctgctatagttttctgtacataattctgttataattctgtacatcattctgctataattctttacataattctgctata 162  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  192119 ctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctata---ctgtacataattctgctata 192206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 719723 - 719810
Alignment:
Q  72 ctgtacataattctgctatagttttctgtacataattctgttataattctgtacatcattctgctataattctttacataattctgctata 162  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  719723 ctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctata---ctgtacataattctgctata 719810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 880830 - 880917
Alignment:
Q  72 ctgtacataattctgctatagttttctgtacataattctgttataattctgtacatcattctgctataattctttacataattctgctata 162  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  880830 ctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctata---ctgtacataattctgctata 880917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 192106 - 192187
Alignment:
Q  82 ttctgctatagttttctgtacataattctgttataattct--gtacatcattctgctataattctttacataattctgctatac 163  Q
    ||||||||||  |||||||||||||||||| |||| || |  ||||||  ||||||||||||||||||||| ||||||||||||    
T  192106 ttctgctata--tttctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatac 192187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 719710 - 719791
Alignment:
Q  82 ttctgctatagttttctgtacataattctgttataattct--gtacatcattctgctataattctttacataattctgctatac 163  Q
    ||||||||||  |||||||||||||||||| |||| || |  ||||||  ||||||||||||||||||||| ||||||||||||    
T  719710 ttctgctata--tttctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatac 719791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 880817 - 880898
Alignment:
Q  82 ttctgctatagttttctgtacataattctgttataattct--gtacatcattctgctataattctttacataattctgctatac 163  Q
    ||||||||||  |||||||||||||||||| |||| || |  ||||||  ||||||||||||||||||||| ||||||||||||    
T  880817 ttctgctata--tttctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatac 880898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 51126660 - 51126318
Alignment:
Q  10 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 109  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126660 ataattctgctatagttttctgtacataattctgttataattctttacataattctgctatactgtacataattctgctatagttttctgtacataattc 51126561  T
Q  110 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgtacatatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126560 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgtacatatgtt 51126461  T
Q  210 ttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126460 ttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaa 51126361  T
Q  310 gaagatgatgacattttccaaaaagctatttatgtggctgcac 352  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  51126360 gaagatgatgacattttccaaaaagctatttttgtggctgcac 51126318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 51126728 - 51126579
Alignment:
Q  10 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126728 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 51126629  T
Q  110 tgttataattctgtacatcattctgctataattctttacataattctgctata 162  Q
    |||||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  51126628 tgttataattctttacataattctgctata---ctgtacataattctgctata 51126579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 51126734 - 51126647
Alignment:
Q  72 ctgtacataattctgctatagttttctgtacataattctgttataattctgtacatcattctgctataattctttacataattctgctata 162  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  51126734 ctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctata---ctgtacataattctgctata 51126647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 51126747 - 51126666
Alignment:
Q  82 ttctgctatagttttctgtacataattctgttataattct--gtacatcattctgctataattctttacataattctgctatac 163  Q
    ||||||||||  |||||||||||||||||| |||| || |  ||||||  ||||||||||||||||||||| ||||||||||||    
T  51126747 ttctgctata--tttctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatac 51126666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 14035651 - 14035764
Alignment:
Q  228 ataacaacattattt-acaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaagaagatgatgacatttt 326  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14035651 ataataacattattttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaagaagatgatgacatttt 14035750  T
Q  327 ccaaaaagctattt 340  Q
    |||| |||||||||    
T  14035751 ccaacaagctattt 14035764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 205 - 340
Target Start/End: Original strand, 13895004 - 13895137
Alignment:
Q  205 atgttttctgctatggttttctaataacaacattatttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaag 304  Q
    ||||||| | |||| ||||||||||||||  |||  |||||||||||||||||||| ||| || |||||||||||||||| ||||||| ||||||  |||    
T  13895004 atgttttttactatagttttctaataacattatt--ttacaataggtgaaggtagacatgaacgattggaatgagcaatcagaccacattagagatcaag 13895101  T
Q  305 atgaagaagatgatgacattttccaaaaagctattt 340  Q
    |||||||||||||||||||||||||| |||||||||    
T  13895102 atgaagaagatgatgacattttccaacaagctattt 13895137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 24037250 - 24037149
Alignment:
Q  254 aggtagaaatggacaattggaatgagcaatccgaccacactagagacgaag---atgaagaagatgatgacattttccaaaaagctatttatgtggctgc 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||    
T  24037250 aggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgatgaagaagatgatgacattttccaaaaagctatttttgtggctgc 24037151  T
Q  351 ac 352  Q
    ||    
T  24037150 ac 24037149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 33231494 - 33231594
Alignment:
Q  240 tttacaataggtgaaggtagaaatggacaattggaatgagcaatccgaccacactagagacgaagatgaagaagatgatgacattttccaaaaagctatt 339  Q
    ||||||||||||||||||||| ||| || |||||||||||||||| ||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||    
T  33231494 tttacaataggtgaaggtagacatgaacgattggaatgagcaatcagaccacattagagatcaagatgaagaagatgatgacattttccaacaagctatt 33231593  T
Q  340 t 340  Q
    |    
T  33231594 t 33231594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University