View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_2 (Length: 646)
Name: NF5229_high_2
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 46097993 - 46097811
Alignment:
| Q |
20 |
agtgttggctaaggatagaaaactcaaggtgaccaagtttgatgtagtttgaataataagggaaaatatggagatgattaagagggttttggtatgagcc |
119 |
Q |
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| T |
46097993 |
agtgttggctaaggatagaaaactcaaggtgaccaagtttgatgtagtttgaataataagggaaaatatggagatgattaagagggttttggtatgagcc |
46097894 |
T |
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| Q |
120 |
taagatggctgaatagtgtctctccaaatacccttcagcttcaccacatagccttataagatgggatctttttccttgcacag |
202 |
Q |
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| T |
46097893 |
taagatggctgaatagtgtctctccaaatacccttcagcttcaccacatagccttataagatgggatctttttccttgcacag |
46097811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 37484734 - 37484601
Alignment:
| Q |
43 |
tcaaggtgaccaagtttgatgtagtttgaataataagggaaaatatggagatgattaagagggttttggtatgagcctaagatggctgaatagtgtctct |
142 |
Q |
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| T |
37484734 |
tcaaggagactaagtttgaggtagtttgaataataagggaaaatgttgagttgattgagtggattattgtatgaagctatgatagttgagtagtgacttt |
37484635 |
T |
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| Q |
143 |
ccaaatacccttcagcttcaccacatagccttat |
176 |
Q |
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| T |
37484634 |
ctaaatggccttcagcttcaccacatagccttat |
37484601 |
T |
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