View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_21 (Length: 352)
Name: NF5229_high_21
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 35801384 - 35801066
Alignment:
| Q |
1 |
ataataaaattttataaaaatgtgactatcaatacactggaaattgaaatttttaacttttaaaataagttgattggaataacttctttattatttagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35801384 |
ataataaaattttataaaaatgtgactatcaatacactggaatttaaaatttttaacttttaaaataagttgattggaataacttctttattatttagaa |
35801285 |
T |
|
| Q |
101 |
tccttaaaaagtttttaggacactcgtnnnnnnnnctctaattctaaatataattacacatttttggaaattattacttcaaaaatacaattaccccggg |
200 |
Q |
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| T |
35801284 |
tccttaaaaagtttttaggacactcgtaagaaaaactctaattctaaatatcattacacatttttggaaattattacttcaaaaatacaatt-------- |
35801193 |
T |
|
| Q |
201 |
catcccaagaggtaaagatctagttccgtaacaatgttcatgtcatggaccacaactagagttattccctaaaattactgaggtggaggtttactttgtg |
300 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
35801192 |
-----------ctaaatatccagttccgtaacaatgttcatgtcatggaccacgact--agttattccctaaaattactgaggtggaggtttactctgtg |
35801106 |
T |
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| Q |
301 |
gagtcttgtgcaatttggtcgcatcatacccgtcatcctt |
340 |
Q |
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| T |
35801105 |
gagtcttgtgcaatttggtcgcatcatacccgtcatcctt |
35801066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 54848555 - 54848625
Alignment:
| Q |
275 |
ttactgaggtggaggtttactttgtggagtcttgtgcaatttggtcgcatcatacccgtcatcctttgctt |
345 |
Q |
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| T |
54848555 |
ttactgaggtggaggattactctgcggagtcttgtgcaatttggtcacatcatacccgtcatccttagctt |
54848625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 54848457 - 54848494
Alignment:
| Q |
210 |
aggtaaagatctagttccgtaacaatgttcatgtcatg |
247 |
Q |
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| T |
54848457 |
aggtaaagatgtagttccataacaatgttcatgtcatg |
54848494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 35438069 - 35438132
Alignment:
| Q |
29 |
tcaatacactggaaattgaaatttttaacttttaaaataagttgattggaataacttctttatt |
92 |
Q |
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||||| || ||||||| ||||| |||||||||| |||||| | |||||||||||||||||||| |
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| T |
35438069 |
tcaatgcattggaaatcgaaatgtttaactttttaaataaatgcattggaataacttctttatt |
35438132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 9892898 - 9892930
Alignment:
| Q |
215 |
aagatctagttccgtaacaatgttcatgtcatg |
247 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
9892898 |
aagatctagttccgtaacaatgttcacgtcatg |
9892930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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