View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_high_23 (Length: 332)

Name: NF5229_high_23
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_high_23
NF5229_high_23
[»] chr3 (1 HSPs)
chr3 (1-323)||(51770173-51770495)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 51770173 - 51770495
Alignment:
Q  1 gtaaatcctaaacaacggtttctctttactttctttgacctaaagaatggatacccgtgaaccttccttttctgagagagagatcatgcaatattttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51770173 gtaaatcctaaacaacggtttctctttactttctttgacctaaagaatggatacccgtgaaccttccttttctgagagagagatcatgcaatattttatt 51770272  T
Q  101 cttaatatttatgttgataaactaaataaagaacaatgtatgtatgtttattatggtaatcctaatgagaca---nnnnnnnnnnnnnnnnnnnggtcac 197  Q
    | |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||                      ||||||    
T  51770273 cctaatatttatgttgataaactaaataaagaaca----atgtatgtttattatggtaatcctaatgagacaaataataataataatataataaggtcac 51770368  T
Q  198 agaaaataagccccactacactagtgtgtcaaatcatgttgcaacaactgctagcataaa-gggaaaaaacagtgaccaaaaatttcaattccacacaac 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51770369 agaaaataagccccactacactagtgtgtcaaatcatgttgcaacaactgctagcataaaggggaaaaaacagtgaccaaaaatttcaattccacacaac 51770468  T
Q  297 acaacaatccttctccctgatattctt 323  Q
    |||||||||||||||||||| ||||||    
T  51770469 acaacaatccttctccctgacattctt 51770495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University