View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_25 (Length: 324)
Name: NF5229_high_25
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 56278855 - 56279171
Alignment:
| Q |
1 |
tatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattccagta |
100 |
Q |
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| T |
56278855 |
tatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattccaata |
56278954 |
T |
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| Q |
101 |
tacaattaaaatagctccctgcaacgcctacatccatctcacccaacataactactgaactgatcataactctgccataatgcaaaatgattcagcagta |
200 |
Q |
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| T |
56278955 |
tacaattaaaatagctccctgcaacgcctacatccatctcacccaacataactactgaactgatcataactctgccataatgcaaaatgattcagcagta |
56279054 |
T |
|
| Q |
201 |
taattggcacatccatcttattgaatccaagaccagcacataataattttatgcgcatcccttcaacatacataaatcagttgtac--ttggtttctatt |
298 |
Q |
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| T |
56279055 |
taattggcacatccatcttattgaatccaagaccagcacataataattttatgcgcatcccttca----acataaatcagttgtacaattggtttctatt |
56279150 |
T |
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| Q |
299 |
atctatgctgtctctgctcct |
319 |
Q |
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| T |
56279151 |
atctatgctgtgtctggtcct |
56279171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 46571485 - 46571709
Alignment:
| Q |
6 |
atgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattcca-------- |
97 |
Q |
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| T |
46571485 |
atgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcaccaaattctaccagccccgtgcattggccaattccaaaagacag |
46571584 |
T |
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| Q |
98 |
-----gtatacaattaaaatagctccctgcaacgcctacatccatctcacccaacataact-actga----actg--atcataactctgccataatgcaa |
185 |
Q |
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| T |
46571585 |
cacccaaatacaattagaatagctccctgcaatgcctacatccatctcacccaacattgctcactcaaactactgacatcacaacttagccataatgcaa |
46571684 |
T |
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| Q |
186 |
aatgattcagcagtataattggcac |
210 |
Q |
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|||||||||||| |||||||||||| |
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| T |
46571685 |
aatgattcagcactataattggcac |
46571709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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