View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_26 (Length: 307)
Name: NF5229_high_26
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 34636406 - 34636702
Alignment:
| Q |
1 |
cctgcaaaacaattggaagtaataattcgcaacactccctgacttactcttcttcccaagccaacaacctctgcctccatttccaagtctcaccaccctc |
100 |
Q |
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| T |
34636406 |
cctgcaaaacaattggaagtaataatttgcaacactcccggacttgctcttcttcccaagccaacaacttctgcctccatttccgagtctcaccaccctc |
34636505 |
T |
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| Q |
101 |
ccccaacctaaagagaacatgtcatacactagacgccattttgtagtcagctagatcaaaaagacgactatatctaaacttcaaaacccctacttttaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34636506 |
ccccaacctaaagagaacatgtcatacactagacgccattttgtagtcagctagatcaaaaagacgactatatctaaacttcaaaacccctacttttaac |
34636605 |
T |
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| Q |
201 |
caaagatcccaccaaaacaaagtatctttaccatctgccacgtcttagcataaattatcttcaaacaaacttccgacccccactcaacccatctctg |
297 |
Q |
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| T |
34636606 |
caaagatcccaccaaaataaagtatctttaccatctgccacctctcagcataaattatcttcaaacaaacttccgacccccactcaccccatctctg |
34636702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 9484286 - 9484228
Alignment:
| Q |
46 |
actcttcttcccaagccaacaacctctgcctccatttccaagtctcaccaccctccccc |
104 |
Q |
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| T |
9484286 |
actctccttcccatgcgaacaacctctgcctccatttccatgcctcaccttcctccccc |
9484228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28424932 - 28425032
Alignment:
| Q |
1 |
cctgcaaaacaattggaagtaataattcgcaacactccctgacttactcttcttcccaagccaacaacctctgcctccatttccaagtctcaccaccctc |
100 |
Q |
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| T |
28424932 |
cctgcaaaacaataggatgtaataacacacaacactccctcacttgttcttcctcctaagccaaaaaactccgccgccatttcaaagcctcgccactctc |
28425031 |
T |
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| Q |
101 |
c |
101 |
Q |
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| |
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| T |
28425032 |
c |
28425032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 49214 - 49144
Alignment:
| Q |
153 |
agatcaaaaagacgactatatctaaacttcaaaacccctacttttaaccaaagatcccaccaaaacaaagt |
223 |
Q |
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| T |
49214 |
agataaaaaagatgactaaatctatccttcaaaatctctccttttaaccaaggatcccaccaaaataaagt |
49144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 21777213 - 21777281
Alignment:
| Q |
54 |
tcccaagccaacaacctctgcctccatttccaagtctcaccaccctcccccaacctaaagagaacatgt |
122 |
Q |
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| T |
21777213 |
tcccaagccaacaatctcctccgtcatttccaaacctcaccatcctcccccaacctaacgaaaacatgt |
21777281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 33445699 - 33445739
Alignment:
| Q |
74 |
cctccatttccaagtctcaccaccctcccccaacctaaaga |
114 |
Q |
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|||||||||||||| ||||||||||| ||||||| |||||| |
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| T |
33445699 |
cctccatttccaagcctcaccaccctaccccaacttaaaga |
33445739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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