View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_27 (Length: 306)
Name: NF5229_high_27
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 23 - 292
Target Start/End: Complemental strand, 6292378 - 6292109
Alignment:
| Q |
23 |
tcggataccctaacttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcataaagcatgttatcataatgtagatttg |
122 |
Q |
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| T |
6292378 |
tcggataccctaacttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcataaagcatgttatcataatgtagatttg |
6292279 |
T |
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| Q |
123 |
tggtaggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6292278 |
tggtaggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgat |
6292179 |
T |
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| Q |
223 |
ccaaaaaggtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttg |
292 |
Q |
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| T |
6292178 |
ccaaaaaggtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttg |
6292109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 32856454 - 32856688
Alignment:
| Q |
29 |
accctaacttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcataaagcatgttatcataatgtagatttgtggtag |
128 |
Q |
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||||||||||| ||||| ||||| || | |||||| || | ||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||| |
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| T |
32856454 |
accctaacttctatcccattaaaacctaatttagcaattgcaaatgtaacagcatctaccatagcataaagcatgttatcataatgtaaatttgtattag |
32856553 |
T |
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| Q |
129 |
gatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgatccaaaa |
228 |
Q |
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| T |
32856554 |
gatcaaccattccttggttaggattaaataatacatagtctaaagatatttgattagggtcattcttataagcaaaataaggataagcattgacccaaaa |
32856653 |
T |
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| Q |
229 |
aggtgcttttgttgtttgcaagaagttcaaaaatt |
263 |
Q |
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|||| ||||||| || ||| ||||||||||||| |
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| T |
32856654 |
gggtgattttgtttttgacaaaaagttcaaaaatt |
32856688 |
T |
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