View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_34 (Length: 259)
Name: NF5229_high_34
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5381910 - 5382122
Alignment:
| Q |
1 |
cagaaaattgctgttggagctgctcgtgggttaaggtatcttcatgaagagtgcagagtaggttgtatcatccaccgtgacatgaggccaaacaatattc |
100 |
Q |
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| T |
5381910 |
cagaaaattgctgttggagctgctcgtgggttaaggtatcttcatgaagagtgcagagtaggttgtatcatccaccgtgacatgaggccaaacaatattc |
5382009 |
T |
|
| Q |
101 |
tcataactcatgattttgaacctctggtaagttagttctctgccttctttttggcaataaaaaataccattacttcactattgcata-ttcatctgtcta |
199 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5382010 |
tcataactcatgattttgaacctctggtacgttagttctctgccttctttttggcaataaaaaataccattacttcactattgcatatttcatctgtcta |
5382109 |
T |
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| Q |
200 |
tatatctttcaat |
212 |
Q |
| |
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||||||||||||| |
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| T |
5382110 |
tatatctttcaat |
5382122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 42744314 - 42744198
Alignment:
| Q |
4 |
aaaattgctgttggagctgctcgtgggttaaggtatcttcatgaagagtgcagagtaggttgtatcatccaccgtgacatgaggccaaacaatattctca |
103 |
Q |
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|||||||| |||||||| |||||||| || || |||||||||||||| |||||||| ||||| || | |||||||| || |||| |||||||| ||| |
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| T |
42744314 |
aaaattgcggttggagcagctcgtggtttgagatatcttcatgaagaatgcagagttggttgcattgtacaccgtgatttgcggcctaacaatatcctcc |
42744215 |
T |
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| Q |
104 |
taactcatgattttgaa |
120 |
Q |
| |
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| ||||||||||||||| |
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| T |
42744214 |
tcactcatgattttgaa |
42744198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 43071794 - 43071666
Alignment:
| Q |
1 |
cagaaaattgctgttggagctgctcgtgggttaaggtatcttcatgaagagtgcagagtaggttgtatcatccaccgtgacatgaggccaaacaatattc |
100 |
Q |
| |
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|||||||||||||| || ||||||||||| || | |||||||||||||||||||| || || || || | |||||||||||| |||| ||||| |||| |
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| T |
43071794 |
cagaaaattgctgtcggggctgctcgtggattgcgatatcttcatgaagagtgcagggtgggatgcattgttcaccgtgacatgcggcctaacaacattc |
43071695 |
T |
|
| Q |
101 |
tcataactcatgattttgaacctctggta |
129 |
Q |
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| || |||||||||||||| || |||||| |
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| T |
43071694 |
ttatcactcatgattttgagccactggta |
43071666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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