View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_4 (Length: 546)
Name: NF5229_high_4
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 24 - 532
Target Start/End: Complemental strand, 44393535 - 44393027
Alignment:
| Q |
24 |
ctcctatacggtaagacccttcaaattgcataatggttctttaaaaacagctcaaaaattcattatttttcatattttgagttcttcagaaatatactat |
123 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44393535 |
ctcctatacggtaagacccttcaaattgcatcatggttctttaaaaacagctcaaaaattaattatttttcatattttgagttcttcagaaatatactat |
44393436 |
T |
|
| Q |
124 |
caaattttcttaaaccaatttcctttcattttttcagtggcacccttctcgtgttggtttcttctacttcaccttctccaatgactcactcaaagcctgt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393435 |
caaattttcttaaaccaatttcctttcattttttcagtggcacccttctcgtgttggtttcttctacttcaccttctccaatgactcactcaaagcctgt |
44393336 |
T |
|
| Q |
224 |
caagattctcagaagctagccataaaggtaactccaacaaaagcttcagcaccagaagcttcttcaccaatgccaactactccaggtccttcttctggtg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393335 |
caagattctcagaagctagccataaaggtaactccaacaaaagcttcagcaccagaagcttcttcaccaatgccaactactccaggtccttcttctggtg |
44393236 |
T |
|
| Q |
324 |
gagatatacaatcttctccttcatttccatggccatttcatcctcaacaaggttcttcaccaggtccagcaccaacaccagaagcaagttcaccaataac |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393235 |
gagatatacaatcttctccttcatttccatggccatttcatcctcaccaaggttcttcaccaggtccagcaccaacaccagaagcaagttcaccaataac |
44393136 |
T |
|
| Q |
424 |
agttccattagtaccatataaaggcagtggtgatggcatgcctttcattaacagtaaccctgcagttcctctgcctactggtgaagttgattctgctact |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393135 |
agttccattagtaccatataaaggcagtggtgatggcatgcctttcattaacagtaaccctgcagttcctctgcctactggtgaagttgattctgctact |
44393036 |
T |
|
| Q |
524 |
atacacccc |
532 |
Q |
| |
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||||||||| |
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| T |
44393035 |
atacacccc |
44393027 |
T |
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