View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_5 (Length: 536)
Name: NF5229_high_5
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_5 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 151239 - 150714
Alignment:
| Q |
1 |
ggaagaattcatccttcattatcttcactatatgccctaccttcaaattcttccactcggtatattcaaaagttccatgcccttggtgcactttaactct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
151239 |
ggaagaattcatccttcattatcttcactatatgccctaccttcaaattcttccactcggtatattcaaaagttccatgcccttggtgcactttaactct |
151140 |
T |
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| Q |
101 |
tctgttgttcacctcaatatcctgtgcaagtattcttgctaaattatacactatgcacatgataacagaacttaaaatgaaggaaacatattaattttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
151139 |
tctgttgttcacctcaatatcctgtgcaagtattcttgctaaattatacactatgcacatgataacagaacttaaaatgaaggaaacatattaattttgt |
151040 |
T |
|
| Q |
201 |
ctaatacacatgtaggaaatattgtagcagnnnnnnngagtacataagaaaccatattagacgttcttgtattttacgtcactctcatcataccaaatct |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
151039 |
ctaatacacatgtaggaaatattgtagcagaaaaaaagagtacataagaaaccatattagacgttcttgtattttacgtcactctcatcataccaaatct |
150940 |
T |
|
| Q |
301 |
tcaactcatataataaacctaacttgaaatataagcgaaaaaagtcaacaaacactagaattaaaaaacaaagagcttcataattacacccttgaaaaca |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150939 |
tcaactcatataataaatctaacttgaaatataagcgaaaaaagtcaacaaacactagaattaaaaaacaaagagcttcataattacacccttgaaaaca |
150840 |
T |
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| Q |
401 |
aatagaattggtgatgataatgtagtacctacctgctttttgcgacgccaatcttcgataccctctttcaccatagtagcaccaataacaacaaccaaag |
500 |
Q |
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| T |
150839 |
aatagaattggtgatgataatgtagtacctacctgctttttgcgacgccaatcttcgataccctctttcaccatagtagcaccaataacaacaaccaaag |
150740 |
T |
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| Q |
501 |
gaaggatagcactaacagcagtataa |
526 |
Q |
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| T |
150739 |
gaaggatagcactaacagcagtataa |
150714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 13706496 - 13706373
Alignment:
| Q |
1 |
ggaagaattcatccttcattatcttcactatatgccctaccttcaaattcttccactcggtatattcaaaagttccatgcccttggtgcactttaactct |
100 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||| | |||||||||||| ||| |||||||| | ||| |||| || | ||||||| |
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| T |
13706496 |
ggaagaattcatccttctttatcttcactatatttcctaccttgagattcttccactccgtagattcaaaattgccaccacctttatgacatataactct |
13706397 |
T |
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| Q |
101 |
tctgttgttcacctcaatatcctg |
124 |
Q |
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||| |||||||||||||||||||| |
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| T |
13706396 |
tctattgttcacctcaatatcctg |
13706373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 430 - 526
Target Start/End: Complemental strand, 13704861 - 13704765
Alignment:
| Q |
430 |
tacctgctttttgcgacgccaatcttcgataccctctttcaccatagtagcaccaataacaacaaccaaaggaaggatagcactaacagcagtataa |
526 |
Q |
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|||||| ||||| ||||| ||||||| ||||| || ||||||||||| ||||||| | |||| | |||||||| ||||||||||||||||||||| |
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| T |
13704861 |
tacctgttttttccgacgaaaatcttcaataccttccttcaccatagttgcaccaactataacagctaaaggaagaatagcactaacagcagtataa |
13704765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 430 - 519
Target Start/End: Original strand, 29592925 - 29593014
Alignment:
| Q |
430 |
tacctgctttttgcgacgccaatcttcgataccctctttcaccatagtagcaccaataacaacaaccaaaggaaggatagcactaacagc |
519 |
Q |
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|||||||||||| | |||||||||||| ||||| |||||||| ||||| || |||||||||||||| | |||||| |||||| ||||||| |
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| T |
29592925 |
tacctgctttttcctacgccaatcttcaataccttctttcacaatagttgctccaataacaacaacaagaggaagaatagcagtaacagc |
29593014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 29591515 - 29591638
Alignment:
| Q |
1 |
ggaagaattcatccttcattatcttcactatatgccctaccttcaaattcttccactcggtatattcaaaagttccatgcccttggtgcactttaactct |
100 |
Q |
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||||||| |||| |||| || ||||||||||| |||||| ||| ||||||||| | |||||||||||| | |||| ||| || ||||||||||| |
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| T |
29591515 |
ggaagaactcattcttctctaccttcactatatttcctaccctcagattcttccatgcagtatattcaaaaatgccatcaactttatgaactttaactct |
29591614 |
T |
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| Q |
101 |
tctgttgttcacctcaatatcctg |
124 |
Q |
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||| |||||||||||||||||||| |
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| T |
29591615 |
tctattgttcacctcaatatcctg |
29591638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7913949 - 7913982
Alignment:
| Q |
1 |
ggaagaattcatccttcattatcttcactatatg |
34 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
7913949 |
ggaagaattcatctttcattatcttcactatatg |
7913982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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