View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_high_57 (Length: 212)

Name: NF5229_high_57
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_high_57
NF5229_high_57
[»] chr4 (14 HSPs)
chr4 (70-191)||(36369223-36369344)
chr4 (70-191)||(36387802-36387923)
chr4 (70-189)||(36433851-36433970)
chr4 (70-190)||(36373842-36373962)
chr4 (70-191)||(36425994-36426115)
chr4 (74-190)||(36397585-36397701)
chr4 (70-191)||(36404514-36404635)
chr4 (70-188)||(36411828-36411946)
chr4 (70-188)||(36417159-36417277)
chr4 (18-54)||(36425870-36425906)
chr4 (18-54)||(36369099-36369135)
chr4 (18-54)||(36404390-36404426)
chr4 (18-54)||(36411704-36411740)
chr4 (18-54)||(36417035-36417071)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 36369223 - 36369344
Alignment:
Q  70 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 169  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||  ||||  |||||||  |||| ||||||||||| ||| |||||||||    
T  36369223 tggagaagggtttgtcaaagttgtgagcttgaaagttcccgatacatctgtggcggttgctaaaggtggtttgagtttggaagaatgtgagaaagaatgc 36369322  T
Q  170 ttaagaaactgctcttgtactg 191  Q
    || |||||||||||||||||||    
T  36369323 ttgagaaactgctcttgtactg 36369344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 36387802 - 36387923
Alignment:
Q  70 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 169  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||  ||| |||  |||| ||||||||||| ||| |||||||||    
T  36387802 tggagaagggtttatcaaagttgtaagcttgaaagttcctgatacatctgtggcagttgctaaaagtggtttgagtttggaagaatgtgagaaagaatgc 36387901  T
Q  170 ttaagaaactgctcttgtactg 191  Q
    ||   |||||| ||||||||||    
T  36387902 ttgcaaaactgttcttgtactg 36387923  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 36433851 - 36433970
Alignment:
Q  70 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 169  Q
    ||||||||||||| ||||| |||| |||||||| ||||||||||||||  ||| |  || ||||||||  |||| ||||||||||| |||||||||||||    
T  36433851 tggagaagggtttatcaaaattgtcagcttgaaagttcctgatacatcgatggcaaatgccaaaggtggtttgagtttggaagaatgtgaaaaagaatgc 36433950  T
Q  170 ttaagaaactgctcttgtac 189  Q
    || |||||||| ||||||||    
T  36433951 ttcagaaactgttcttgtac 36433970  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 36373842 - 36373962
Alignment:
Q  70 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 169  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||| |||||||| ||||   |||||||   ||| |||||||||||  ||  ||||||||    
T  36373842 tggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatctgtggcagttactaaaggtggtctgagtttggaagaatgcgaggaagaatgc 36373941  T
Q  170 ttaagaaactgctcttgtact 190  Q
    || ||||||||||||||||||    
T  36373942 ttgagaaactgctcttgtact 36373962  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 36425994 - 36426115
Alignment:
Q  70 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 169  Q
    ||||||||||||| |||||||||||||| | || |||||||| || |||  || ||||| || || ||  ||||||||||| |||| ||| |||||||||    
T  36425994 tggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatttggatgaatgtgagaaagaatgc 36426093  T
Q  170 ttaagaaactgctcttgtactg 191  Q
    || |||||||||||||||||||    
T  36426094 ttgagaaactgctcttgtactg 36426115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 36397585 - 36397701
Alignment:
Q  74 gaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgcttaa 173  Q
    ||||||||| ||||||||||||||||||| |||||||||| ||||| || ||||  || || ||  |||| |||||| |||| ||| ||||||||||| |    
T  36397585 gaagggtttatcaaagttgtaagcttgaaagttcctgatatatctggggcagttaccatagatggtttgagtttggatgaatgtgagaaagaatgcttga 36397684  T
Q  174 gaaactgctcttgtact 190  Q
    |||||||||| ||||||    
T  36397685 gaaactgctcctgtact 36397701  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 36404514 - 36404635
Alignment:
Q  70 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 169  Q
    ||||||||||||| | |||||||||||  |||| ||| |||||| |||||  | ||||| || || ||  |||| ||||||||||| ||| |||||||||    
T  36404514 tggagaagggtttataaaagttgtaagtgtgaaagttgctgatatatctggagcagttgccatagatggtttgagtttggaagaatgtgagaaagaatgc 36404613  T
Q  170 ttaagaaactgctcttgtactg 191  Q
    || ||||| |||||||||||||    
T  36404614 ttgagaaattgctcttgtactg 36404635  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 36411828 - 36411946
Alignment:
Q  70 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 169  Q
    |||||||||||||  ||||||| ||||  |||| |||||||||| ||||| || ||||| || || ||  |||| ||||||||||| ||| ||||| |||    
T  36411828 tggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggtttgactttggaagaatgtgagaaagattgc 36411927  T
Q  170 ttaagaaactgctcttgta 188  Q
    || |||||||| |||||||    
T  36411928 ttgagaaactgttcttgta 36411946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 36417159 - 36417277
Alignment:
Q  70 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 169  Q
    |||||||||||||  ||||||| ||||  |||| |||||||||| ||||| || ||||| || || ||  |||| ||||||||||| ||| ||||| |||    
T  36417159 tggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggtttgactttggaagaatgtgagaaagattgc 36417258  T
Q  170 ttaagaaactgctcttgta 188  Q
    || |||||||| |||||||    
T  36417259 ttgagaaactgttcttgta 36417277  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36425870 - 36425906
Alignment:
Q  18 actttgaggactttaagtgtacttgtttacttggttt 54  Q
    |||||||| ||||||||||||||||||||||||||||    
T  36425870 actttgagaactttaagtgtacttgtttacttggttt 36425906  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36369099 - 36369135
Alignment:
Q  18 actttgaggactttaagtgtacttgtttacttggttt 54  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  36369099 actttgaagactttaagtgcacttgtttacttggttt 36369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36404390 - 36404426
Alignment:
Q  18 actttgaggactttaagtgtacttgtttacttggttt 54  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  36404390 actttgacgactttaagtgcacttgtttacttggttt 36404426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36411704 - 36411740
Alignment:
Q  18 actttgaggactttaagtgtacttgtttacttggttt 54  Q
    ||||||||  |||||||||||||||||||||||||||    
T  36411704 actttgagagctttaagtgtacttgtttacttggttt 36411740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36417035 - 36417071
Alignment:
Q  18 actttgaggactttaagtgtacttgtttacttggttt 54  Q
    ||||||||  |||||||||||||||||||||||||||    
T  36417035 actttgagagctttaagtgtacttgtttacttggttt 36417071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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