View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_59 (Length: 208)
Name: NF5229_high_59
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 38336710 - 38336538
Alignment:
| Q |
17 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336710 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
38336611 |
T |
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| Q |
117 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtggg |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336610 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtggg |
38336538 |
T |
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Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 29638337 - 29638509
Alignment:
| Q |
17 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638337 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
29638436 |
T |
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| Q |
117 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtggg |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638437 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtggg |
29638509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 20418343 - 20418515
Alignment:
| Q |
17 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418343 |
atactgcactgtagaattgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
20418442 |
T |
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| Q |
117 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtggg |
189 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418443 |
ctaattttggaaattgaagaatacatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtggg |
20418515 |
T |
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