View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_6 (Length: 532)
Name: NF5229_high_6
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 37224235 - 37223734
Alignment:
| Q |
18 |
tttattacctatccatttct--ttcctttttctaacaatgattttgaactatgtagcattgacactttagactcaaaatttgtctagtgtccaaaatgga |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
37224235 |
tttattacctatccatttctctttcctttttctaacaatgattttgaactatgtagcactgacactttagactcaaaatttgtctagtgtccaaaatgta |
37224136 |
T |
|
| Q |
116 |
tcagcgtccgacaccaacacgttactgatacatgtcactaagttcgatattaccagtttttcaaattattataagtgttgacgtatcaactgtcagtgtc |
215 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37224135 |
tcagcgttcgacaccaacacgttactgatacatgtcactaagttcgatattaccagtttttcaaattattataagtgttgacgtatcaactgtcagtgtc |
37224036 |
T |
|
| Q |
216 |
gtgttcttgtctgtgtcacactttttattctgttttgcaatagattatgagcaatggcaagtaccaaagtgtagtacatagagcagctgtgagcaatgga |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37224035 |
gtgtccttgtctgtgtcacactttttattctgttttgcaatagattatgagcaatggcaagtacaaaagtgtagtacatagagcagctgtgagcaatgga |
37223936 |
T |
|
| Q |
316 |
gctacaagaatgtcattagcaaccgttattgcgccatccttggacactgtggttgaaccagcttccgagctactggacaatgaaagtaatcctgcagcat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37223935 |
gctacaagaatgtcattagcaaccgttattgcgccatccttggacactgtggttgaaccagcttccgagctactagacaatgaaagtaatcctgcagcat |
37223836 |
T |
|
| Q |
416 |
atgttgggatgaaacatatagattatatgaaacttcaacgaaacaaccagctttacgggaaatctgtgctaaacaaagtgaaaatatgattttgaatcac |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37223835 |
atgttgggatgaaacatatagattatatgaaacttcaacgaaacaaccagctttacgggaaatctgtgctaaacaaagtgaaaatatgattttgaatcac |
37223736 |
T |
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| Q |
516 |
ct |
517 |
Q |
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|| |
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| T |
37223735 |
ct |
37223734 |
T |
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