View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_high_7 (Length: 503)
Name: NF5229_high_7
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 7 - 487
Target Start/End: Complemental strand, 49276316 - 49275836
Alignment:
| Q |
7 |
tttctcaaactgatggctcacaagaagttctcatctgcaaagttatggcttctagcagcacagtttgaaatacgtatgctgaatttcaaaggtgctcgta |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276316 |
tttctcaaactgatggctcacaagaagttctcatctgcaaagttatggcttctagcagcacagtttgaaatacgtatgctgaatttcaaaggtgctcgtc |
49276217 |
T |
|
| Q |
107 |
gaatattagattatgctattggaaaggctcctaaacataagctatttaagaagtatatagaaatggaattggagcttggtaatacagatcgatgcaggaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276216 |
gaatattagattatgctattggaaaggctcctaaacataagctatttaagaagtatatagaaatggaattggagcttggtaatacagatcgatgcaggaa |
49276117 |
T |
|
| Q |
207 |
attgtatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttatcagagactgaacgagct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276116 |
attgtatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttatcagagactgaacgagct |
49276017 |
T |
|
| Q |
307 |
agagcaatatttgagtctgcaattgctcgaccagagttggtaaagcaagagttgttttggaaggcattccatgattttgagactgctaagtgtgaatttg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276016 |
agagcaatatttgagtctgcaattgctcgaccagaattggtaaagcaagagttgttttggaaggcattccatgattttgagactgctaagtgtgaatttg |
49275917 |
T |
|
| Q |
407 |
agagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctatgcagagtttg |
487 |
Q |
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| T |
49275916 |
agagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctatgcagagtttg |
49275836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Complemental strand, 49279869 - 49279402
Alignment:
| Q |
11 |
tcaaactgatggctcacaagaagttctcatctgcaaagttatggcttctagcagcacagtttgaaatacgtatgctgaatttcaaaggtgctcgtagaat |
110 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
49279869 |
tcaacctgatggctcacaagaagatctcatctgcaaagttatggcttctagcagcacagtttgaaatacgtatgctgaatttcaatggtgctcgtcgaat |
49279770 |
T |
|
| Q |
111 |
attagattatgctattggaaaggctcctaaacataagctatttaagaagtatatagaaatggaattggagcttggtaatacagatcgatgcaggaaattg |
210 |
Q |
| |
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||||| |||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49279769 |
attaggttatgcaattggaatcgctcctaaacatgagctatttaagaagtatattgaaatggaattggagcttggtaatacagatcgatgcaggaatttg |
49279670 |
T |
|
| Q |
211 |
tatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttatcagagactgaacgagctagag |
310 |
Q |
| |
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|||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
49279669 |
tatgtaaagtatctggagtggtcagctaaaaaatgcaatgcatggagcaagtatgcagaagagttggagagatcttcatctgagactgaacgagctagag |
49279570 |
T |
|
| Q |
311 |
caatatttgagtctgcaattgctcgaccagagttggtaaagcaagagttgttttggaaggcattccatgattttgagactgctaagtgtgaatttgagag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
49279569 |
caatatttgagtctgcaattgctcgaccag---------agcatgagttgttatggaaggcattccttgattttgagactgctaagattgaatttgagag |
49279479 |
T |
|
| Q |
411 |
aacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctatgcagagtttg |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279478 |
aacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttg |
49279402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 149 - 332
Target Start/End: Complemental strand, 2289186 - 2289006
Alignment:
| Q |
149 |
tatttaagaagtatatagaaatggaattggagcttggtaatacagatcgatgcaggaaattgtatgtaaattatctggagtggtcagctgacaaatgcaa |
248 |
Q |
| |
|
||||||||||||||||||| || ||| || |||||||||||| |||| ||||||| ||| | |||| ||| ||| ||||||||||| |||| || ||| | |
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|
| T |
2289186 |
tatttaagaagtatatagagatagaactgcagcttggtaatatagatagatgcagaaaactatatgaaaagtatttggagtggtcacctgaaaattgcta |
2289087 |
T |
|
| Q |
249 |
agcatggagcaagtatgcagaagatttggagagatctttatcagagactgaacgagctagagcaatatttgagtctgcaattgc |
332 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
2289086 |
tgcatggagcaagtatgcagaa---ctagagagatctttagctgagactgaacgagctagagcaatatttgagcttgcaattgc |
2289006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 2289430 - 2289284
Alignment:
| Q |
1 |
agggagtttctcaaactgatggctcacaagaagttctcatctgcaaagttatggcttctagcagcacagtttgaaatacgtatgctgaatttcaaaggtg |
100 |
Q |
| |
|
||||||| |||||| | ||| ||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||| ||| ||||| |
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| T |
2289430 |
agggagtgtctcaaccagatacctcaccagaagttctcatttgcaaagatatggcttctagcagcccagtttgaaatacgtcagctgaatctcacaggtg |
2289331 |
T |
|
| Q |
101 |
ctcgtagaatattagattatgctattggaaaggctcctaaacataag |
147 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
2289330 |
ctcgtcaaatattagggaatgctattggaaaggctcctaaagataag |
2289284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 2288607 - 2288554
Alignment:
| Q |
378 |
tgattttgagactgctaagtgtgaatttgagagaacaagagtgcattatgaaag |
431 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||| || ||||||||| |
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|
| T |
2288607 |
tgattttgaaactgccgagtgtgaatttgagagagcaagagcgctttatgaaag |
2288554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 332
Target Start/End: Original strand, 34789750 - 34789930
Alignment:
| Q |
149 |
tatttaagaagtatatagaaatggaattggagcttggtaatacagatcgatgcaggaaattgtatgtaaattatctggagtggtcagctgacaaatgcaa |
248 |
Q |
| |
|
||||||||||||||||||| || ||| || |||||||||||| |||||||||||| ||| | |||| ||| ||| |||||||| || |||| || ||| | |
|
|
| T |
34789750 |
tatttaagaagtatatagagatagaactgcagcttggtaatatagatcgatgcagaaaactatatgaaaaatatttggagtggacacctgaaaattgcta |
34789849 |
T |
|
| Q |
249 |
agcatggagcaagtatgcagaagatttggagagatctttatcagagactgaacgagctagagcaatatttgagtctgcaattgc |
332 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||| | ||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
34789850 |
tgcatggtgcaagtatgcagaa---ctagagagatctttagctgagaccgaacgagctagagcaatatttgagcttgcaattgc |
34789930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 34789503 - 34789649
Alignment:
| Q |
1 |
agggagtttctcaaactgatggctcacaagaagttctcatctgcaaagttatggcttctagcagcacagtttgaaatacgtatgctgaatttcaaaggtg |
100 |
Q |
| |
|
||||||| |||||| | ||| ||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||| ||| || |
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|
| T |
34789503 |
agggagtgtctcaaccagatacctcaccagaagttctcatttgcaaagatatggcttctagcagcccagtttgaaatacgtcagctgaatctcactggct |
34789602 |
T |
|
| Q |
101 |
ctcgtagaatattagattatgctattggaaaggctcctaaacataag |
147 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
34789603 |
ctcgtcaaatattaggaaatgctattggaaaggctccaaaagataag |
34789649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 487
Target Start/End: Original strand, 34790156 - 34790262
Alignment:
| Q |
378 |
tgattttgagactgctaagtgtgaatttgagagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctat |
477 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||| ||||||||| ||||||||| ||| | |||| | || |||||||| || ||||||| |||||| |
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|
| T |
34790156 |
tgattttgaaactgttgagtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaa---agcacttgaaggtatggatgagctat |
34790252 |
T |
|
| Q |
478 |
gcagagtttg |
487 |
Q |
| |
|
|||||||||| |
|
|
| T |
34790253 |
gcagagtttg |
34790262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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