View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5229_high_8 (Length: 477)
Name: NF5229_high_8
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 6217114 - 6216662
Alignment:
| Q |
19 |
atcaattcatgtgttaaggttctttgagtaatacaagaaaacaaaaaacatgtatgtactgccacttagataaagtatatagagattttgctacttttgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6217114 |
atcaattcatgtgttaaggttctttgagtaatacaagaaaacaaaaaacatgtatgtactgccacttagataaagtatatagagattttgccacttttgc |
6217015 |
T |
|
| Q |
119 |
atcaaaacataaacaagnnnnnnnn--gcattgtggttttatgctattgnnnnnnnaagggtggttttatgctattgttaatactcatatattggcctaa |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6217014 |
atcaaaacataaacaagaaaaaaaaaagcattgtggttttatgctattgtttttttaagggtggttttatgctattgttgatactcatatattggcctaa |
6216915 |
T |
|
| Q |
217 |
tttagatgtgacttcacatcaataaagtatattaagaaaaaa--ttgtagtgtacgttatgtatgtatcttgtatttgattattattaatgtgtgtttaa |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6216914 |
tttagatgtgatttcacatcaataaagtatattaagaaaaaaaattgtagtgtaagttatgtatgtatcttgtatttgattattattaatgtgtgtttaa |
6216815 |
T |
|
| Q |
315 |
ccttgctaagagtctcatatacaacgttgattttaaaagagttgtgttaggcgcaatatagaaacttagttgatataagagtttattcaatatttattga |
414 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
6216814 |
ccttgttaagagtctcatatacaacgttgattttaaaagagttgtgttaggtgcaatatagaatcttagttgatataagagtttattcaacttttattga |
6216715 |
T |
|
| Q |
415 |
gctatacactattgcgtcacactctagatactcaaccttaaacgtgatgatgt |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6216714 |
gctatacactattgcgtcacactctagatactcaaccttaaatgtgatgatgt |
6216662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University