View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5229_low_10 (Length: 474)
Name: NF5229_low_10
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 35106819 - 35107214
Alignment:
| Q |
18 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35106819 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
35106918 |
T |
|
| Q |
118 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35106919 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgt |
35107018 |
T |
|
| Q |
218 |
gtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
35107019 |
gtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgctatggagaatggtgttctcgctg |
35107118 |
T |
|
| Q |
318 |
tcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt-aactcagaacaagctttgttactcgtcttttgttt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35107119 |
tcactgtccctaaggaagagatcaagaagcctgaagtcaaagccattgaaatctctggttaaactcagaacaagctttgttactcgtcttttgttt |
35107214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 35073041 - 35072682
Alignment:
| Q |
18 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35073041 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
35072942 |
T |
|
| Q |
118 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072941 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgt |
35072842 |
T |
|
| Q |
218 |
gtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072841 |
gtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactg |
35072742 |
T |
|
| Q |
318 |
tcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt |
377 |
Q |
| |
|
| ||||| || || ||||| | ||||| ||||| | || |||| ||||||||||||| |
|
|
| T |
35072741 |
ttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt |
35072682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 35097641 - 35098000
Alignment:
| Q |
18 |
cttcattccctcaggagaattctgcttttgtgagcac-caggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactga |
116 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||||| || | | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
35097641 |
cttcattccctcgtgagaattctgcatttgcaagcacacaag-tggattggaaggagaccccagaagcacatgtgttcgaggctgatcttcctggactga |
35097739 |
T |
|
| Q |
117 |
agaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcg |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
35097740 |
agaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcg |
35097839 |
T |
|
| Q |
217 |
tgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcact |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35097840 |
tgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcact |
35097939 |
T |
|
| Q |
317 |
gtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt |
377 |
Q |
| |
|
|| ||||| || || |||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
35097940 |
gttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt |
35098000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 36296814 - 36296508
Alignment:
| Q |
18 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| |
|
|
| T |
36296814 |
cttcatttcctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaa |
36296715 |
T |
|
| Q |
118 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgt |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||||||||| || || |||||||||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
36296714 |
gaaggaagaagtgaaggttgaaattgaagatgacagagttcttcagattagtggagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgc |
36296615 |
T |
|
| Q |
218 |
gtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactg |
317 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36296614 |
gtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactg |
36296515 |
T |
|
| Q |
318 |
tcactgt |
324 |
Q |
| |
|
| ||||| |
|
|
| T |
36296514 |
taactgt |
36296508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 125 - 377
Target Start/End: Original strand, 35098037 - 35098289
Alignment:
| Q |
125 |
gaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagc |
224 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35098037 |
gaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagc |
35098136 |
T |
|
| Q |
225 |
gtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgt |
324 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35098137 |
gtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgt |
35098236 |
T |
|
| Q |
325 |
ccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt |
377 |
Q |
| |
|
|| || |||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
35098237 |
tccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt |
35098289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 89 - 376
Target Start/End: Complemental strand, 36940765 - 36940478
Alignment:
| Q |
89 |
gtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaa |
188 |
Q |
| |
|
|||||||| |||||| |||| ||| ||||||||||||||| ||| || || ||||||||||||||||||||||||||||| || | || | |||||| | |
|
|
| T |
36940765 |
gtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgatagggttcttcagataagtggaaaaagaagcgttgaga |
36940666 |
T |
|
| Q |
189 |
aagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaa |
288 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||| || ||||| || |||||||| |||||||||||| |||| |
|
|
| T |
36940665 |
aagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggatcaaatgaa |
36940566 |
T |
|
| Q |
289 |
agctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggt |
376 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| | |||| | ||| ||||||| ||||||||| |
|
|
| T |
36940565 |
agctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaagttaaaaccattgatatctctggt |
36940478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 130 - 336
Target Start/End: Original strand, 36961300 - 36961507
Alignment:
| Q |
130 |
gaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagc |
229 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||| ||||| ||||| | |||||| |||||||||||||| || |||||||| | ||||||| |||| |
|
|
| T |
36961300 |
gaaggtagagattgaagttgatagggttcttcagatcagcggagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagc |
36961399 |
T |
|
| Q |
230 |
agtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagc-tgcaatggagaatggtgttctcactgtcactgtccct |
328 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||| || |||||||| ||||| || || ||||||||||||||||||||| ||| | ||| |
|
|
| T |
36961400 |
agtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaggtgaatgcaaacatgggagaatggtgttctcactgtaactattcct |
36961499 |
T |
|
| Q |
329 |
aaggaaga |
336 |
Q |
| |
|
|||||||| |
|
|
| T |
36961500 |
aaggaaga |
36961507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 36936094 - 36935979
Alignment:
| Q |
62 |
gattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttc |
161 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||||||||| |||||||| |
|
|
| T |
36936094 |
gattggaaggagaccccagaagtagatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatatggttcttc |
36935995 |
T |
|
| Q |
162 |
agataagcggtgagag |
177 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
36935994 |
agataagcggagagag |
36935979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 36935974 - 36935858
Alignment:
| Q |
263 |
gagaatgcgaaaatggatcaagtgaaagctgcaa-tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcc |
361 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || || | |||||| | |||||||||||| | || || |
|
|
| T |
36935974 |
gagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagacc |
36935875 |
T |
|
| Q |
362 |
attgaaatctctggtta |
378 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
36935874 |
attgatatctctggtta |
36935858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 58 - 254
Target Start/End: Complemental strand, 35072161 - 35071965
Alignment:
| Q |
58 |
gattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggtt |
157 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || |
|
|
| T |
35072161 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
35072062 |
T |
|
| Q |
158 |
cttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
254 |
Q |
| |
|
|||||||||| || ||||||| | | || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
35072061 |
cttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
35071965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 35107235 - 35107275
Alignment:
| Q |
411 |
ttgttttgtaatgcttactttgtttgtgatgtctgtgcaag |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35107235 |
ttgttttgtaatgcttactttgtttgtgatgtctgtgcaag |
35107275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 36953768 - 36953720
Alignment:
| Q |
252 |
ttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatgga |
300 |
Q |
| |
|
||||||| || || ||||| |||| |||||||||||||||||||||||| |
|
|
| T |
36953768 |
ttagattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga |
36953720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 24041097 - 24040736
Alignment:
| Q |
18 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24041097 |
cttcattccctcaggagaattctgcttttgcgagcaccaggatcgattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaa |
24040998 |
T |
|
| Q |
118 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgt |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24040997 |
gaaggaagaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgt |
24040898 |
T |
|
| Q |
218 |
gtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24040897 |
gtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtattctcactg |
24040798 |
T |
|
| Q |
318 |
tcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggttaa |
379 |
Q |
| |
|
||||||||||||||||||| | ||||||||| || | || ||||||| |||||||||||| |
|
|
| T |
24040797 |
tcactgtccctaaggaagaagttaagaagcctcaagtgaagaccattgatatctctggttaa |
24040736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 24014540 - 24014181
Alignment:
| Q |
18 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24014540 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaa |
24014441 |
T |
|
| Q |
118 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
24014440 |
gaaggaggaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgt |
24014341 |
T |
|
| Q |
218 |
gtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactg |
317 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| || || || || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24014340 |
gtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactg |
24014241 |
T |
|
| Q |
318 |
tcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt |
377 |
Q |
| |
|
| ||||| || || ||||| | ||||| ||||| | || |||| ||||||||||||| |
|
|
| T |
24014240 |
ttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt |
24014181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 3123032 - 3123225
Alignment:
| Q |
18 |
cttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaa |
117 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| || | || || ||||| || | |||||| ||||||||||| ||||||||||| || |||| |
|
|
| T |
3123032 |
cttcattccctggtgagaattccgcatttgtgagcacaagagtggactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaa |
3123131 |
T |
|
| Q |
118 |
gaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatgg |
211 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||||||||||||||||| || |||| |||||| |||||||| ||||| |||| |||| |
|
|
| T |
3123132 |
gaaggaagaggtgaaggttgaaattgaagatgataaggttcttcagataagcggagaaaggaccgttgagaaagaagacaagaacgatcgatgg |
3123225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 336
Target Start/End: Original strand, 34918978 - 34919235
Alignment:
| Q |
79 |
agaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagagg |
178 |
Q |
| |
|
||||||||| ||||||| | ||||||||||| ||||||| || |||||||| |||||||| ||||||| | || | |||||||| |||||||| |
|
|
| T |
34918978 |
agaagctcacgtgttcagtgtagatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatggaaatgtgttgcagataagtggtgagaga |
34919077 |
T |
|
| Q |
179 |
aacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatgg |
278 |
Q |
| |
|
||| || | ||||| ||| ||||| | ||||||||||| ||| | || ||| || || |||||||||||||| || || ||||||| ||||||| |
|
|
| T |
34919078 |
aacaaagagcaggaagagaaggatgataagtggcatcgtgttgagagaagttctgggaagtttatgaggaggtttaggttgcctgagaatgttaaaatgg |
34919177 |
T |
|
| Q |
279 |
atcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaaga |
336 |
Q |
| |
|
|||| || ||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| |
|
|
| T |
34919178 |
atcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 351
Target Start/End: Original strand, 26578990 - 26579249
Alignment:
| Q |
92 |
ttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaag |
191 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||||||||||||| |||||||| ||| | ||| | ||||||| || |||||||| |||| || | |
|
|
| T |
26578990 |
ttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagaggatcgtgttttgaagataagtggagagaggaaaattgagaagg |
26579089 |
T |
|
| Q |
192 |
aagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagc |
291 |
Q |
| |
|
|||| ||||||||| |||||||| || || || ||| |||| || | || ||||||| || || |||||||| || ||||| | |||||||| |
|
|
| T |
26579090 |
aagacaagaatgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagc |
26579189 |
T |
|
| Q |
292 |
tgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctga |
351 |
Q |
| |
|
|| |||||||||||||| || ||||| | ||| ||||||| ||| | ||||||||||| |
|
|
| T |
26579190 |
tgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctga |
26579249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University