View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_11 (Length: 471)
Name: NF5229_low_11
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 33742782 - 33742376
Alignment:
| Q |
18 |
attattaatttgagcagaatatgaattcagttcatttgccaaacatgttactgccttgcagggaaagacacaagaacatgaataagttcaatacatttgt |
117 |
Q |
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| T |
33742782 |
attattaatttgagcagaatatgaattcagttcatttgccaaacatgttactgccttgcagggaaagacacaagaacatgaataagttcaatacatttgt |
33742683 |
T |
|
| Q |
118 |
caaatcatgatagaaagtgggaataaaattgtttgtacctcataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcat |
217 |
Q |
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| T |
33742682 |
caa-tcatgatagaaagtgggaataaaattgtttgtacctcataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcat |
33742584 |
T |
|
| Q |
218 |
ttaaaaggtagccatcaacctatgcagcattttcgcagcgagaataatcaatgtcttatgcatgaccatgaaatgatagtaaaatagcgcggacacaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33742583 |
ttaaaaggtagccatcaacctatgcagcattttcacagcgagaataatcaatgtcttatgcatgaccatgaaatgatagtaaaatagcgcggacacaaat |
33742484 |
T |
|
| Q |
318 |
atgtgcttgtgtgtgtaatacaaagcagcatctagatggaaaaatttcaagggcctaacaaaaatatcatgttnnnnnnnnntgtatctatttgccgtct |
417 |
Q |
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| T |
33742483 |
atgtgcttgtgtgtgtaatacaaagcagcatctagatggaaaaatttcaagagcctaacaaaaatatcatgttaaaaaaaaatgtatctatttgccgtct |
33742384 |
T |
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| Q |
418 |
atcaaaaa |
425 |
Q |
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|||||||| |
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| T |
33742383 |
atcaaaaa |
33742376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 139 - 374
Target Start/End: Complemental strand, 33731221 - 33730978
Alignment:
| Q |
139 |
aataaaattgtttgtacctcataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacct |
238 |
Q |
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||||||||||| ||||||||| |||||| ||| ||||||||||||| || ||| ||||| | ||||||||||||| |||||| | ||||||||| |
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| T |
33731221 |
aataaaattgtctgtacctcaagatactcgcggttctgattttcccatattatcttcctgtacgacttctcttcctcattgaaaaggaacgcatcaacct |
33731122 |
T |
|
| Q |
239 |
atgcagcattttcgcagcgagaataatcaatgt-cttatgcatgaccatgaaatgatagtaaaatag--------cgcggacacaaatatgtgcttgtgt |
329 |
Q |
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| T |
33731121 |
aagcagcattttggcagcaagaataatcagtgtgtttatgcatgacaatgatctgatagtataatagcgcagagccgcagacacaaacatgtgtttgtgt |
33731022 |
T |
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| Q |
330 |
gtgtaatacaaagcagcatctagatggaaaaatttcaagggccta |
374 |
Q |
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| T |
33731021 |
gtgtaatacaaagcaacatcaagat-gcaaattttcaagggccta |
33730978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 33732959 - 33732909
Alignment:
| Q |
20 |
tattaatttgagcagaatatgaattcagttcatttgccaaacatgttactg |
70 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
33732959 |
tattaatttgatcagaattcaaattcagttcatttgccaaacatgtcactg |
33732909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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