View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5229_low_13 (Length: 399)
Name: NF5229_low_13
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_13 |
 | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 8529439 - 8529819
Alignment:
| Q |
1 |
ttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529439 |
ttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttg |
8529538 |
T |
|
| Q |
101 |
tagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529539 |
tagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgca |
8529638 |
T |
|
| Q |
201 |
agaattcacaatatcaaacttatcaatatctctgttgcaagcaatataaagactctgtctacccctataactgttctcgtcgtttttccctgaaactaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8529639 |
agaattcacaatatcaaacttatcaatatctctgttgcaagcaatataaagactctgtctacccctatcactgttctcgtcgtttttccctgaaactaat |
8529738 |
T |
|
| Q |
301 |
ctggcagcacgaaaagggttcttggattcattattgatctggtctcttttatccctaaatgatctgagaggaagcttgaat |
381 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529739 |
ctggcagcacgaaaagggcgcttggattcattattgatctggtctcttttatccctaaatgatctgagaggaagcttgaat |
8529819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 8536003 - 8536382
Alignment:
| Q |
1 |
ttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttg |
100 |
Q |
| |
|
||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||| ||| || ||| | |
|
|
| T |
8536003 |
ttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtcctagccttcttacccgattttgatccg |
8536102 |
T |
|
| Q |
101 |
tagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgca |
200 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536103 |
caatagattcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgca |
8536202 |
T |
|
| Q |
201 |
agaattcacaatatcaaacttatcaatatctctgttgcaagcaatataaagactctgtctacccctataactgttctcgtcgtttttccctgaaactaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536203 |
agaattcacaatatcaaacttatcaaaatctcttttgcaagcaatataaagactttgtctacccgtataactgttctcgtcgtttttccctgaaactaat |
8536302 |
T |
|
| Q |
301 |
ctggcagcacgaaaagggttcttggattcattattgatctggtctcttttatccctaaatgatctgagaggaagcttgaa |
380 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536303 |
ctcgcagcacgaaaaggtcgcttggattcattattgatctggtctcttttatccctaaatgatctgagaggaagcttgaa |
8536382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 23 - 380
Target Start/End: Complemental strand, 1599882 - 1599525
Alignment:
| Q |
23 |
ttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttat |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||| |||||| |||| | |||||||||||||||||||| |
|
|
| T |
1599882 |
ttatcaccttatattcattagttttaggttggaaaccaaaagcagctcgtccttgccttcctacccgagtttgattcgcggtagattcaggaagtcttat |
1599783 |
T |
|
| Q |
123 |
gaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaactta |
222 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1599782 |
gaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaagaattcacaatattaaactta |
1599683 |
T |
|
| Q |
223 |
tcaatatctctgttgcaagcaatataaagactctgtctacccctataactgttctcgtcgtttttccctgaaactaatctggcagcacgaaaagggttct |
322 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||| ||| ||||||||| || |||||||| ||||||||||| ||||||||||||||| || |
|
|
| T |
1599682 |
tcaaaatcactgttgcaagcaatataaagactttgtctacccgtatcactgttctcatcctttttccccgaaactaatctcgcagcacgaaaagggcgct |
1599583 |
T |
|
| Q |
323 |
tggattcattattgatctggtctcttttatccctaaatgatctgagaggaagcttgaa |
380 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599582 |
tggattcattattgatctcgtcacttttatccctaaatgatctgagaggaagcttgaa |
1599525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 5 - 381
Target Start/End: Complemental strand, 9074338 - 9073956
Alignment:
| Q |
5 |
catgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagt |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||| ||||||||||| || || |
|
|
| T |
9074338 |
catgtcttatccacattcttattaccttatattcattagtattaggttggaatccaaaaccaacttgtcctaccattcttacccgagttcgattcgtggt |
9074239 |
T |
|
| Q |
105 |
agattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaa |
204 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| || ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9074238 |
agcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccattgcaagaa |
9074139 |
T |
|
| Q |
205 |
ttcacaatatcaaacttatcaatatctctgttgcaagcaatata-----aagactctg-tctacccctataactgttctcgtcgtttttccctgaaacta |
298 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||| |||| || | || |||| |||||| | ||||||| | ||||||||| ||||||| |
|
|
| T |
9074138 |
ttcacaatatcaaacttatcataatatttgttgcaagcagtataactataacggtttgttctatccctatcaatgttctcattgtttttccccgaaacta |
9074039 |
T |
|
| Q |
299 |
atctggcagcacgaaaagggttcttggattcattattgatctggtctcttttatccctaaatgatctgagaggaagcttgaat |
381 |
Q |
| |
|
|||| |||||||||| |||| ||| |||||||| |||||| | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9074038 |
atcttgcagcacgaacagggcgattgaattcattactgatctcgcttcttttatccctaaatgatatgagaggaagcttgaat |
9073956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 8547588 - 8547439
Alignment:
| Q |
100 |
gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc |
199 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||| |||||||| || ||| |||||||||||||| || ||| ||| |
|
|
| T |
8547588 |
gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc |
8547489 |
T |
|
| Q |
200 |
aagaattcacaatatcaaacttatcaatatctctgttgcaagcaatataa |
249 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
8547488 |
aagaattcacaatatcaaaatgatcacgatctctgttgcaagcaatataa |
8547439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 2844548 - 2844435
Alignment:
| Q |
108 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
207 |
Q |
| |
|
|||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
2844548 |
ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc |
2844449 |
T |
|
| Q |
208 |
acaatatcaaactt |
221 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2844448 |
acaatgccaaactt |
2844435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 2873991 - 2873878
Alignment:
| Q |
108 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
207 |
Q |
| |
|
|||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
2873991 |
ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc |
2873892 |
T |
|
| Q |
208 |
acaatatcaaactt |
221 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2873891 |
acaatgccaaactt |
2873878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 2856464 - 2856268
Alignment:
| Q |
28 |
accttatattcattagttttaggttggaatccaaaaccagcttg--accttgcattcttactcgagttcg-atttgtagtagattcaggaagtcttatga |
124 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| || ||| | ||| | ||| | | | |||||| |||||||||| || | | |
|
|
| T |
2856464 |
accttatattcattagttttgggttggaaaccaaaaccagcttgtacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaagtattgtaa |
2856365 |
T |
|
| Q |
125 |
actcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaactt |
221 |
Q |
| |
|
| |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
2856364 |
attccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaatgccaaactt |
2856268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 8644833 - 8644956
Alignment:
| Q |
102 |
agtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaa |
201 |
Q |
| |
|
||||| || |||||||||||| |||||||| |||||||| ||||| || |||||||| |||| | |||| | | ||||||||| || ||||||||| |
|
|
| T |
8644833 |
agtagctttaggaagtcttataaactccccagtgactggattgcaaattactaatggtcttccttcaaatggatgacgcaaacaaagcaagccattgcaa |
8644932 |
T |
|
| Q |
202 |
gaattcacaatatcaaacttatca |
225 |
Q |
| |
|
|||||||||| | ||||||||||| |
|
|
| T |
8644933 |
gaattcacaacaccaaacttatca |
8644956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 2904585 - 2904384
Alignment:
| Q |
23 |
ttattaccttatattcattagttttaggttggaatccaaaaccagcttga--ccttgcattcttactcgagttcgattt-gtagtagattcaggaagtct |
119 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||||||| || ||| | ||| | ||| || | |||||| |||||||||| | |
|
|
| T |
2904585 |
ttatcaccttatattcattagttttgggttggaaaccaaaaccagcttgcacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaagtat |
2904486 |
T |
|
| Q |
120 |
tatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaac |
219 |
Q |
| |
|
| |||| |||| ||| ||||||||||| ||| |||| ||| |||| ||||| ||||| |||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
2904485 |
tgtgaattccctcgttactgggttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaatgccaaac |
2904386 |
T |
|
| Q |
220 |
tt |
221 |
Q |
| |
|
|| |
|
|
| T |
2904385 |
tt |
2904384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 8637396 - 8637454
Alignment:
| Q |
22 |
cttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcat |
80 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |
|
|
| T |
8637396 |
cttatcaccttatattcattagttttaggttggaaaccaaaaccaacttgtcctcgcat |
8637454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 2844637 - 2844594
Alignment:
| Q |
28 |
accttatattcattagttttaggttggaatccaaaaccagcttg |
71 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
2844637 |
accttatattcattagttttgggttggaaaccaaaaccagcttg |
2844594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 8644747 - 8644787
Alignment:
| Q |
28 |
accttatattcattagttttaggttggaatccaaaaccagc |
68 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8644747 |
accttatattcattagttttaggttggaagccaaaagcagc |
8644787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 2874074 - 2874031
Alignment:
| Q |
28 |
accttatattcattagttttaggttggaatccaaaaccagcttg |
71 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
2874074 |
accttatattcattagttttgggttggaaactaaaaccagcttg |
2874031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 11354082 - 11354043
Alignment:
| Q |
22 |
cttattaccttatattcattagttttaggttggaatccaa |
61 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11354082 |
cttatcaccttatattcattagttttaggttggaagccaa |
11354043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 11373311 - 11373350
Alignment:
| Q |
22 |
cttattaccttatattcattagttttaggttggaatccaa |
61 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11373311 |
cttatcaccttatattcattagttttaggttggaagccaa |
11373350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 244
Target Start/End: Original strand, 9004088 - 9004224
Alignment:
| Q |
111 |
aggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttcca---aaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
207 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| | |||||| ||| ||| | |||||||| | |||||||| || |||||||| |||||| |
|
|
| T |
9004088 |
aggaagtcttatgaattccccagtgactgggttgcataccactaaagggaagccattgctaaatgggtcacataaacaaagcaagccattgcatgaattc |
9004187 |
T |
|
| Q |
208 |
acaatatcaaacttatcaatatctctgttgcaagcaa |
244 |
Q |
| |
|
|||| ||| || || |||| ||| |||||||||||| |
|
|
| T |
9004188 |
acaacatctaagttggcaatgtctatgttgcaagcaa |
9004224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 9443600 - 9443980
Alignment:
| Q |
1 |
ttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443600 |
ttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttg |
9443699 |
T |
|
| Q |
101 |
tagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443700 |
tagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgca |
9443799 |
T |
|
| Q |
201 |
agaattcacaatatcaaacttatcaatatctctgttgcaagcaatataaagactctgtctacccctataactgttctcgtcgtttttccctgaaactaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
9443800 |
agaattcacaatatcaaacttatcaatatctctgttgcaatcaatataaagactctgtctacccctatcactgttgtcgttgtttttccctgaaactaat |
9443899 |
T |
|
| Q |
301 |
ctggcagcacgaaaagggttcttggattcattattgatctggtctcttttatccctaaatgatctgagaggaagcttgaat |
381 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443900 |
ctggcagcacgaaaagggcgcttggattcaatattgatctggtctcttttatccctaaatgatctgagaggaagcttgaat |
9443980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 48361456 - 48361076
Alignment:
| Q |
1 |
ttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttg |
100 |
Q |
| |
|
||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| | |
|
|
| T |
48361456 |
ttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttacccgagttcgatacg |
48361357 |
T |
|
| Q |
101 |
tagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
48361356 |
cagtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattgca |
48361257 |
T |
|
| Q |
201 |
agaattcacaatatcaaacttatcaatatctctgttgcaagcaatataaagactctgtctacccctataactgttctcgtcgtttttccctgaaactaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||| || ||||||||| |
|
|
| T |
48361256 |
agaattcacaatatcaaacttatcaaaatctctgttgcaagcaatataaagactttgtctacccctatcactgttctcatcattttttcccgaaactaat |
48361157 |
T |
|
| Q |
301 |
ctggcagcacgaaaagggttcttggattcattattgatctggtctcttttatccctaaatgatctgagaggaagcttgaat |
381 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48361156 |
cttgcagcacgaaaagggtgcttggattcattattgatatcgtctcttttatccctaaatgatctgagaggaagcttgaat |
48361076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 35780317 - 35780544
Alignment:
| Q |
3 |
aacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcga---gt------t |
93 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || | |
|
|
| T |
35780317 |
aacatgtcttatccatatttttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttactcgatccgtatttaat |
35780416 |
T |
|
| Q |
94 |
c------gatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatggg-tttccaaaagatgggtcagacaaacaa |
186 |
Q |
| |
|
| || | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | | |||| | |||||||||| |
|
|
| T |
35780417 |
cttaaaggagtcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaa |
35780516 |
T |
|
| Q |
187 |
agtaaaccattgcaagaattcacaatat |
214 |
Q |
| |
|
|| ||||||||||||||||| ||||||| |
|
|
| T |
35780517 |
agcaaaccattgcaagaattgacaatat |
35780544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 16716982 - 16717133
Alignment:
| Q |
99 |
tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg |
198 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||| || ||| ||||||||||| || || ||||| |
|
|
| T |
16716982 |
tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta |
16717081 |
T |
|
| Q |
199 |
caagaattcacaatatcaaacttatcaatatctctgttgcaagcaatataaa |
250 |
Q |
| |
|
|| ||||||||||||| |||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
16717082 |
catgaattcacaatattaaacttatcacgatcactgttgccagcaatataaa |
16717133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 249
Target Start/End: Original strand, 5293 - 5434
Alignment:
| Q |
108 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| || ||| | ||||||||| || || ||||| || |||||| |
|
|
| T |
5293 |
ttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccattacaggaattc |
5392 |
T |
|
| Q |
208 |
acaatatcaaacttatcaatatctctgttgcaagcaatataa |
249 |
Q |
| |
|
|||||| ||| ||||| |||||| ||||||||||||||| |
|
|
| T |
5393 |
acaatactaaaattatcgcgatctctattgcaagcaatataa |
5434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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