View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5229_low_16 (Length: 382)
Name: NF5229_low_16
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_16 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 17)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 20293281 - 20292909
Alignment:
| Q |
1 |
acaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20293281 |
acaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaag |
20293182 |
T |
|
| Q |
101 |
gtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20293181 |
gtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaa |
20293082 |
T |
|
| Q |
201 |
tgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20293081 |
tgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccac |
20292982 |
T |
|
| Q |
301 |
cgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcattttgtaaagtataat |
373 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20292981 |
cgcgtttcatctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcattttgtaaagtataat |
20292909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 364
Target Start/End: Original strand, 20169466 - 20169827
Alignment:
| Q |
3 |
accttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggt |
102 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20169466 |
accttcagcaaaatctggaactttaatcatttgtagtttcaaaaacccatcttcctttgtacttgtggttttattgttgaccctttcacactgcaaaggt |
20169565 |
T |
|
| Q |
103 |
gtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatg |
202 |
Q |
| |
|
||||| | |||||||||||||||||| |||||| || |||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
20169566 |
gtccttcgaacacacccaccggtccagttatgtatattccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggtgagctcaatg |
20169665 |
T |
|
| Q |
203 |
aactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccaccg |
302 |
Q |
| |
|
|| |||| |||||||| |||||||||| | ||||||||||||| |||||| || |||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
20169666 |
aattacaacttgcaaatgccccacataagtcgtaaacatcacactttgattcccgacttgtccatagaacttgcacttctttcttctcatcatcccaccc |
20169765 |
T |
|
| Q |
303 |
cgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcattttgta |
364 |
Q |
| |
|
|||||| ||||||| ||||| |||| | || | |||||| ||||| |||||||||||||||| |
|
|
| T |
20169766 |
cgtttcttctaattctccttttgaatttaggttatagataaaaaattcatcatcattttgta |
20169827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 3 - 343
Target Start/End: Complemental strand, 20272472 - 20272132
Alignment:
| Q |
3 |
accttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggt |
102 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||| | |||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
20272472 |
accttcagcaaaatctggaactttaatcgtctgtagtttcaaaatcccatcttcctttgtacttgtggttttattgtggaccctttcgcactgcaaaggt |
20272373 |
T |
|
| Q |
103 |
gtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatg |
202 |
Q |
| |
|
||| |||||||||||||||| | ||| || | | | ||||||| ||| ||| | ||| |||||||| ||| |||||| |||||||||||| || ||| |
|
|
| T |
20272372 |
gtcttcctaacacacccaccagaccagttgtttattttccattcacgtatatttttaggttcaaatcctttcagacagctgcatattggtgaggtcgatg |
20272273 |
T |
|
| Q |
203 |
aactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccaccg |
302 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||| || | | |||||||||||||||||||||||| |
|
|
| T |
20272272 |
aactacagattgcaaatgcgccacatataccataaacatcacactctgaatctcggcttgtccatgtaacatgaacttctttcttctcatcatcccaccg |
20272173 |
T |
|
| Q |
303 |
cgtttcgtctaattttccttgtgaagtcagctgatagatca |
343 |
Q |
| |
|
|||| |||||| ||| |||||| ||| |||||||||| |
|
|
| T |
20272172 |
tttttcttctaatactccatgtgaattcaaatgatagatca |
20272132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 20302483 - 20302140
Alignment:
| Q |
1 |
acaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaag |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
20302483 |
acaccttctgcaaaatcgggaactttaaccatctgcaatttcaaaaacccatcttcttttgtacttgtggttttattgttgaccctttcacactgcaaag |
20302384 |
T |
|
| Q |
101 |
gtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaa |
200 |
Q |
| |
|
| | |||||||||||||||| |||||||| | | || ||||||| | |||||| | || |||| ||| |||||||||| || ||||| | |||||| |
|
|
| T |
20302383 |
atcttctcctaacacacccactagtccaattgtttctattccattcctgtatgttgattggatcaaaccctttcaaacagctgcaaattggcgtgctcaa |
20302284 |
T |
|
| Q |
201 |
tgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccac |
300 |
Q |
| |
|
|||| |||| ||||||| ||||| || |||||||||||||||||||| |||| || | || || | |||| || |||||||||||| |||| |||| |
|
|
| T |
20302283 |
tgaattacaaattgcaaatgccccgcaaataccataaacatcacactccgatttctggctagtgaatttaacttccacttctttcttctcgtcattccac |
20302184 |
T |
|
| Q |
301 |
cgcgtttcgtctaattttccttgtgaagtcagctgatagatcaa |
344 |
Q |
| |
|
||| |||| |||||||||||||||||| |||| | ||||||||| |
|
|
| T |
20302183 |
cgcatttcttctaattttccttgtgaattcaggttatagatcaa |
20302140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 5 - 361
Target Start/End: Complemental strand, 20278214 - 20277858
Alignment:
| Q |
5 |
cttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggtgt |
104 |
Q |
| |
|
|||| |||||| |||| ||||| ||| ||| |||||||||||| ||||||||||| | | |||||||||||||| |||| ||||| ||||| || |
|
|
| T |
20278214 |
cttcagcaaaagctggtactttcaccgtctgtaatttcaaaaacgcatcttcctttctccgtgtggttttattgttatccctactacactgcaaagtggt |
20278115 |
T |
|
| Q |
105 |
cctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaa |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||| ||||||||| ||| |||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
20278114 |
tctcctaacacacccaccggtccagttatgtccattccattcttgtatgtttctaggttcaaatcctctcagacagatacatattggtgagaacaatgaa |
20278015 |
T |
|
| Q |
205 |
ctacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccaccgcg |
304 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| | ||| || |||||||||| || | | |||||| ||||| |||| |||| | | |
|
|
| T |
20278014 |
ctacagcttgcaaatgccccacatataccgtaaacatcacactccaagtcttggcttgtccatgtaacaataacttcttttttctcgtcataccactgtg |
20277915 |
T |
|
| Q |
305 |
tttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcatttt |
361 |
Q |
| |
|
|| | |||||||||||||||||| | || ||| |||||| ||| || |||||||||| |
|
|
| T |
20277914 |
ttgcttctaattttccttgtgaatttaggtgaaagatcacaaagtcctcatcatttt |
20277858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 20063946 - 20064269
Alignment:
| Q |
9 |
tgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggtgtcctc |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| | ||| | ||||||| |
|
|
| T |
20063946 |
tgcaaaatcaggaactttaaccatcttcaatttcaaaaacccatcttcttttgtact-----------ttttg----tttcacatttcaatgatgtcctc |
20064030 |
T |
|
| Q |
109 |
ctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaactac |
208 |
Q |
| |
|
|||||||||||||| ||||| || | | || ||||||| | |||| | || ||| |||||||| |||||||||| |||||||||| | |||||||||||| |
|
|
| T |
20064031 |
ctaacacacccacctgtccagttgtttctattccattcctgtatgctcctaggttcaaatcctttcaaacagctgcatattggtgtgttcaatgaactac |
20064130 |
T |
|
| Q |
209 |
agcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccaccgcgtttc |
308 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||||||||| |||| | |||||||| |||| || |||||||| |||||||| ||| |||||| |
|
|
| T |
20064131 |
agcttgcaaatgccccacatgtaccatatacatcacactctgattttcggctagtccatgtaacttgcacttctttctcctcatcattccaagacgtttc |
20064230 |
T |
|
| Q |
309 |
gtctaattttccttgtgaagtcagctgatagatcaaaaa |
347 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
20064231 |
ttctaattttccttgtgaattaagcttatagatcaaaaa |
20064269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 67 - 361
Target Start/End: Complemental strand, 20282732 - 20282436
Alignment:
| Q |
67 |
gtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaa |
166 |
Q |
| |
|
|||||||||||||| || | |||||| |||||| || ||||||||||||||||||||||| |||||| || ||||||||| ||||||||| ||| ||| |
|
|
| T |
20282732 |
gtggttttattgttagccttgccacactgcaaaggggttctcctaacacacccaccggtccagttatgtatattccattcttgtatgtttctaggttcaa |
20282633 |
T |
|
| Q |
167 |
atcctctcaaacagc--tacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtc |
264 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| ||| || || || |
|
|
| T |
20282632 |
atcctctcagacagagatacatattggtgagaccaatgaattacagcttgcaaatgccccacatataccataagcatcacactctgagtcttggcttctc |
20282533 |
T |
|
| Q |
265 |
catgtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcatttt |
361 |
Q |
| |
|
||||| || | | |||||||||||| ||||||||||| |||| || ||||||||||||||| | || |||||||||| ||| || |||| ||||| |
|
|
| T |
20282532 |
catgtaacaataacttctttcttctcctcatcccaccgtctttcttcaaattttccttgtgaattgaggtgatagatcataaagtcctcataatttt |
20282436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 20300410 - 20300160
Alignment:
| Q |
1 |
acaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaag |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
20300410 |
acaccttctgcaaattcaggaactttaaccatctgcaatatcaaaaatccatcttcctttgtactggtggttttattgttgaccctttaacactgaaaag |
20300311 |
T |
|
| Q |
101 |
gtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaa |
200 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | | || ||||||||| ||| ||||| ||||| || |||||||| | || |||||||| || | |
|
|
| T |
20300310 |
ctgtcctcctgacacacccaccagtccaattgtttctattccattcttgtatcgacttgggttcaaattctttcaaacaggtgcaaattggtgaacttag |
20300211 |
T |
|
| Q |
201 |
tgaactacagcttgcaaaggccccacatataccataaacatcacactctga |
251 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
20300210 |
tgaactacagcttgcaaataccccgcatataccataaccatcacactctga |
20300160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 20287911 - 20287673
Alignment:
| Q |
3 |
accttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctt---tgtactggtggttttattgttgaccctttcacactccaaa |
99 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| ||||| |||||||||||||||| |||| |
|
|
| T |
20287911 |
accttgtgcaaaatcaggaactttaaccatcttcaatttcaaaaatccatcttccttctttgtacttgtggtgttattattgaccctttcacactgcaaa |
20287812 |
T |
|
| Q |
100 |
ggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctca |
199 |
Q |
| |
|
|| |||| |||||||||||||| ||||| || ||| || |||| || | | |||| |||||| |||||||||||||||| || ||||||||| | ||| |
|
|
| T |
20287811 |
agtatccttctaacacacccaccagtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatattggtaacttca |
20287712 |
T |
|
| Q |
200 |
atgaactacagcttgcaaaggccccacatataccataaa |
238 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
20287711 |
atgaactacagcttgcgaatgccccacatataccataaa |
20287673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 3 - 342
Target Start/End: Complemental strand, 20242270 - 20241931
Alignment:
| Q |
3 |
accttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggt |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||| |||| |||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
20242270 |
accttcagcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttctacttgtggttttattggtgacccttttacacagcaaaggt |
20242171 |
T |
|
| Q |
103 |
gtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatg |
202 |
Q |
| |
|
|| |||||||||||| || ||||| || | | |||||||||| | ||||||||| |||||||| ||||||| || || | |||||||||||||| |
|
|
| T |
20242170 |
ctctgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatcctttcaaacaactgcaaactggtgagctcaatg |
20242071 |
T |
|
| Q |
203 |
aactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccaccg |
302 |
Q |
| |
|
|| ||||||||| ||| | ||||||| ||||||||||||||| |||| | | || || ||||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
20242070 |
aattacagcttgtaaaatctccacatagaccataaacatcacattctgcgttttggcttttccatctcactttcatttctttattctgatcatcccacca |
20241971 |
T |
|
| Q |
303 |
cgtttcgtctaattttccttgtgaagtcagctgatagatc |
342 |
Q |
| |
|
| ||| || ||| |||||| |||| |||| ||||||||| |
|
|
| T |
20241970 |
cattttttcaaatattccttttgaattcaggtgatagatc |
20241931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 343
Target Start/End: Complemental strand, 20230320 - 20229980
Alignment:
| Q |
3 |
accttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggt |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | |||||||||||| ||||||||| ||| |||||||||||| || ||||| ||||| ||| ||| |
|
|
| T |
20230320 |
accttcagcaaaatctggaactttaaccatctgtagtttcaaaaacccgtcttcctttctacctgtggttttattgccgatccttttacactgcaatggt |
20230221 |
T |
|
| Q |
103 |
gtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatg |
202 |
Q |
| |
|
||| |||||||||||| || ||||| || | | || ||||||| | |||||| || |||| ||| |||||||||| || ||||| | |||||||| |
|
|
| T |
20230220 |
ttccgcctaacacacccgccagtccagttgtttctattccattcctgtatgttcaccggatcaaaccctttcaaacagctgcaaattggcgtgctcaatg |
20230121 |
T |
|
| Q |
203 |
aactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatcccaccg |
302 |
Q |
| |
|
|| ||||||||| ||| |||||||||| ||||||||||||||||||||| | | || || |||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
20230120 |
aattacagcttgtaaatgccccacatagaccataaacatcacactctgagtattggcttttccatgccaccatcatttctttcttctgatcatcccacca |
20230021 |
T |
|
| Q |
303 |
cgtttcgtctaattttccttgtgaagtcagctgatagatca |
343 |
Q |
| |
|
|||| || ||| |||||| |||| |||| |||||||||| |
|
|
| T |
20230020 |
tatttcttccaatattccttctgaattcaggtgatagatca |
20229980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 70 - 342
Target Start/End: Complemental strand, 20262836 - 20262564
Alignment:
| Q |
70 |
gttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatc |
169 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||| ||| |||||||||||| || ||||| || | | |||||||||| | ||||||||| |||||| |
|
|
| T |
20262836 |
gttttattgctgatcctttcacactgcaaaggtctccgcctaacacacccgccagtccagttgtttctactccattcacgagtatttctgggttcaaatc |
20262737 |
T |
|
| Q |
170 |
ctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgt |
269 |
Q |
| |
|
|| ||||||| || |||| ||||||||||||||| ||||||||| ||| | ||||| | ||||||||||||||| |||| | | || || ||||||| |
|
|
| T |
20262736 |
ctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctccacagagaccataaacatcacattctgtgttttggcttttccatgt |
20262637 |
T |
|
| Q |
270 |
cactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatc |
342 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||| || ||| ||||||||||| |||| ||||||||| |
|
|
| T |
20262636 |
cactttcatttctttattcttatcatcccaccatatttcttcgaatattccttgtgaattcaggtgatagatc |
20262564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 20090472 - 20090564
Alignment:
| Q |
1 |
acaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacac |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||| ||| |||| |
|
|
| T |
20090472 |
acaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggttttgttgttaaccttttgacac |
20090564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 19937574 - 19937428
Alignment:
| Q |
99 |
aggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctc |
198 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||| ||||||| ||| |||| || || |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
19937574 |
aggtgtcctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctt |
19937475 |
T |
|
| Q |
199 |
aatgaactacagcttgcaaaggccccacatataccataaacatcaca |
245 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
19937474 |
tgtgaattacagcttgcaaaatgtccacatacaccataaacatcaca |
19937428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 19968713 - 19968567
Alignment:
| Q |
99 |
aggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctc |
198 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||| ||||||| ||| |||| || || |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
19968713 |
aggtgtcctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctt |
19968614 |
T |
|
| Q |
199 |
aatgaactacagcttgcaaaggccccacatataccataaacatcaca |
245 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
19968613 |
tgtgaattacagcttgcaaaatgtccacatacaccataaacatcaca |
19968567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 343
Target Start/End: Original strand, 20090586 - 20090765
Alignment:
| Q |
164 |
caaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgt |
263 |
Q |
| |
|
|||||||||||||||| | ||||| |||||| ||||| || |||| ||||||| |||||||| || |||||| ||| ||| ||| | | || |||| |
|
|
| T |
20090586 |
caaatcctctcaaacaaatgcatatcggtgagttcaattaattacacgttgcaaatgccccacaaatgccataacgatcgtactatgacttttggcttgt |
20090685 |
T |
|
| Q |
264 |
ccatgtcactttcatttctttcttctcatcatcccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatca |
343 |
Q |
| |
|
|||||| ||| || || |||||| ||||||||||||| ||||| |||||| ||||||||||| |||| |||||||||| |
|
|
| T |
20090686 |
ccatgtaactagcacttatttcttgtcatcatcccaccatgtttcttctaatcttccttgtgaattcaggtgatagatca |
20090765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 47602086 - 47602182
Alignment:
| Q |
99 |
aggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgag |
195 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||| || |||||| ||| |||| || ||| |||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
47602086 |
aggtgtcctcctaacacacccaccagtccatttttgtctattccatttctctttgttccttggttcaaaccctttcaaatagctacatattagtgag |
47602182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 40820560 - 40820937
Alignment:
| Q |
1 |
acaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaag |
100 |
Q |
| |
|
|||||||||||||| |||| ||||| |||| | ||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
40820560 |
acaccttctgcaaattctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatcctttcacactccaaag |
40820659 |
T |
|
| Q |
101 |
gtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaa |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
40820660 |
gtgtcctcctaacacaccgacccgtccaattatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagctcaa |
40820759 |
T |
|
| Q |
201 |
tgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtc-----catgtcactttcatttctttcttctcatcat |
295 |
Q |
| |
|
| |||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40820760 |
taaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgtccatgtcatgtcactttcatttctttcttctcatcat |
40820859 |
T |
|
| Q |
296 |
cccaccgcgtttcgtctaattttccttgtgaagtcagctgatagatcaaaaactcatcatcattttgtaaagtataat |
373 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| || || ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
40820860 |
cccatcgcgtttcatctaattttccttgtgatgttaggtgatagatcaaaatctcctcatcattttgtaaagtataat |
40820937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 40825236 - 40825472
Alignment:
| Q |
9 |
tgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggtgtcctc |
108 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || || ||||| |||||| ||||||||| |||| ||||||| |
|
|
| T |
40825236 |
tgcaaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtacttgttgtcttattattgaccttttcacactgcaaaagtgtcctt |
40825335 |
T |
|
| Q |
109 |
ctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaactac |
208 |
Q |
| |
|
|||||||||||||| ||||| || ||| || |||| || | | |||| |||||| |||||||||||||||| || ||||| ||| | |||||||||||| |
|
|
| T |
40825336 |
ctaacacacccacctgtccagttgtgtctattccactcctgtttgttcctgggttcaaatcctctcaaacaactgcatatcggtaacttcaatgaactac |
40825435 |
T |
|
| Q |
209 |
agcttgcaaaggccccacatataccataaacatcaca |
245 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
40825436 |
agcttgaaaatgccccacatataccataaacgtcaca |
40825472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 134894 - 134795
Alignment:
| Q |
199 |
aatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcactttcatttctttcttctcatcatccc |
298 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||| || |||| || |||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
134894 |
aatgaactacaacttgcaaatactccacatataccataaa-at-acaccctaattctcaacttgtccatgtcactttcgtttctttcttctcatcatccc |
134797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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