View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_17 (Length: 377)
Name: NF5229_low_17
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 27424992 - 27425356
Alignment:
| Q |
1 |
aaatctcggattgttcttttacatgcatcctatccattctcaaaggaagcatcatatctagcatcagtgtaccctcaggtaaacattttatatctcggtg |
100 |
Q |
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| T |
27424992 |
aaatctcggattgttcttttacatgcatcctatccattctcaaaggaagcatcatatctagcatcagtgtaccctcaggtaaacattttatatctcggtg |
27425091 |
T |
|
| Q |
101 |
acttgtattagtagatttgaatatggattacatgttcactcgtaggtaataacacaatattctcattcaggtttaccttgattttggattggcaattcca |
200 |
Q |
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| T |
27425092 |
atttgtattagtagatttgaatatggattacatgttcactcgtaggtaataacacaatattctcattcaggtttaccttgattttggattggcaattcca |
27425191 |
T |
|
| Q |
201 |
aagcttagtgtacatgggatgatttcatcattgaaagatattttagagctggctccaataaataaggtgacgttataatgaagttaaataattattcacc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
27425192 |
aagcttagtgtacatgggatgatttcatcattgaaagatattttagagctggctccaataaataaggtgacattataagcaagttaaataattattcacc |
27425291 |
T |
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| Q |
301 |
gagatcatgaattttcagataaatatttcttgcgttgcaggtgatgttcagtactgatggctatg |
365 |
Q |
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| T |
27425292 |
gagatcatgaattttcagataaatatttcttgcattgcaggtgatgttcagtactgatggctatg |
27425356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 27403964 - 27404243
Alignment:
| Q |
1 |
aaatctcggattgttcttttacatgcatcctatccattctcaaaggaagcatcatatctagcatcagtgtaccctcaggtaaacattttatatctcggtg |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||| |
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| T |
27403964 |
aaatctcggatcgttcttttacatgcatcctatccattctcaagggaagcatcatatctagcatctgtgtaccctcaggtaaacatttcataactcagtg |
27404063 |
T |
|
| Q |
101 |
acttgt--attagtagatttgaatatggattacatgttcactcgtaggtaataacacaatattctcattcaggtttaccttgattttggattggcaattc |
198 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
27404064 |
acttgttcattactagatttgaatatggattacatgttcactggtaggtaataacacaatcttctcattcaggtttaccttgattttggtctggcaattc |
27404163 |
T |
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| Q |
199 |
caaagcttagtgtacatgggatgatttcatcattgaaagatattttagagctggctccaataaataaggtgacgttataa |
278 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
27404164 |
caaagctgagtgtacatgggatgatttcatcattgaaagagcttttagagctggctccaataaataaggtgacattataa |
27404243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 27450040 - 27450142
Alignment:
| Q |
166 |
ttcaggtttaccttgattttggattggcaattccaaagcttagtgtacatgggatgatttcatcattgaaagatattttagagctggctccaataaataa |
265 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| || |||||||| ||||||||| ||||||| |||| || |
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| T |
27450040 |
ttcaggtttaccttgattttggcttggctattccaaagcttagtgtgcatggcatggtttctgcagtgaaagatcttttagagcaggctccattaaacaa |
27450139 |
T |
|
| Q |
266 |
ggt |
268 |
Q |
| |
|
||| |
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|
| T |
27450140 |
ggt |
27450142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 27449901 - 27449950
Alignment:
| Q |
10 |
attgttcttttacatgcatcctatccattctcaaaggaagcatcatatct |
59 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
27449901 |
attgttcttttacatacatcatatccattctcaaaggaagcatcatatct |
27449950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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