View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_low_20 (Length: 364)

Name: NF5229_low_20
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_low_20
NF5229_low_20
[»] chr7 (1 HSPs)
chr7 (17-354)||(45675688-45676011)
[»] chr1 (4 HSPs)
chr1 (171-306)||(37963053-37963188)
chr1 (199-237)||(16138163-16138201)
chr1 (173-282)||(51044663-51044772)
chr1 (199-231)||(16127079-16127111)
[»] chr4 (1 HSPs)
chr4 (187-230)||(53557711-53557754)
[»] chr3 (3 HSPs)
chr3 (196-227)||(20740369-20740400)
chr3 (197-227)||(20732633-20732663)
chr3 (173-282)||(34626408-34626517)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 45676011 - 45675688
Alignment:
Q  17 accaataattgtaataattaaggaactgataagtgttgcatttagatttggcttttaattaagtcatcaagattattttgttacatgcnnnnnnnnnnnn 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |                  
T  45676011 accaataattgtaataattaaggaattgataagtgttgcatttagatttggcttttaattaagtcatcaagattatttt--tattt------------tt 45675926  T
Q  117 nnctttctacgaatcgaagcgacaatgactaatatactttggtgccttttgaattatcaggtggtcgcagattgcagctcagttacctggaagaacagac 216  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675925 ttctttctacgaatcgaagcgacaatgactaatatactttggtgccttttgaattatcaggtggtcgcagattgcagctcagttacctggaagaacagac 45675826  T
Q  217 aatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaaggaattgatccaaacacacaccaaccattctctgagaacaatgaca 316  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675825 aatgagataaaaaatctatggaattcaagtctgaaaaagaagctaaagcaaaaaggaattgatccaaacacacaccaaccattctctgagaacaatgaca 45675726  T
Q  317 atgacacaccaaatattcagattcaaaaaacctctgtg 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45675725 atgacacaccaaatattcagattcaaaaaacctctgtg 45675688  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 306
Target Start/End: Original strand, 37963053 - 37963188
Alignment:
Q  171 tatcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaa 270  Q
    |||||| ||||| ||||||||||| || ||||| |||||||| |||||||| || |||||||||||||||||| |||| ||||||| | | |  ||||      
T  37963053 tatcagatggtctcagattgcagcacaattaccaggaagaactgacaatgagattaaaaatctatggaattcatgtctcaagaagaggttgagacaaagt 37963152  T
Q  271 ggaattgatccaaacacacaccaaccattctctgag 306  Q
    || |||||||||||||||||| ||||| ||||||||    
T  37963153 ggcattgatccaaacacacacaaaccactctctgag 37963188  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 16138201 - 16138163
Alignment:
Q  199 ttacctggaagaacagacaatgaaataaaaaatctatgg 237  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  16138201 ttacctggaagaacagacaatgaaataaaaaatgtatgg 16138163  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 51044663 - 51044772
Alignment:
Q  173 tcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaagg 272  Q
    |||||||| | || |||||| | || ||||| || |||||||| ||||| ||||||||  | |||||||||||| |||||||||| |||| | || ||||    
T  51044663 tcaggtgggctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaagg 51044762  T
Q  273 aattgatcca 282  Q
     |||||||||    
T  51044763 gattgatcca 51044772  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 16127111 - 16127079
Alignment:
Q  199 ttacctggaagaacagacaatgaaataaaaaat 231  Q
    |||||||||||||||||||||||||||||||||    
T  16127111 ttacctggaagaacagacaatgaaataaaaaat 16127079  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 53557711 - 53557754
Alignment:
Q  187 attgcagctcagttacctggaagaacagacaatgaaataaaaaa 230  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  53557711 attgctgctcagttacctggaagaacagacaatgacataaaaaa 53557754  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 20740400 - 20740369
Alignment:
Q  196 cagttacctggaagaacagacaatgaaataaa 227  Q
    ||||||||||||||||||||||||||||||||    
T  20740400 cagttacctggaagaacagacaatgaaataaa 20740369  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 20732663 - 20732633
Alignment:
Q  197 agttacctggaagaacagacaatgaaataaa 227  Q
    |||||||||||||||||||||||||||||||    
T  20732663 agttacctggaagaacagacaatgaaataaa 20732633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 34626517 - 34626408
Alignment:
Q  173 tcaggtggtcgcagattgcagctcagttacctggaagaacagacaatgaaataaaaaatctatggaattcaagtctgaagaagaagctaaagcaaaaagg 272  Q
    |||||||| | || |||||||| || ||||| || ||||| || ||||| || |||||  | |||||||||||| |||||||||| |||| | || ||||    
T  34626517 tcaggtgggctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaagg 34626418  T
Q  273 aattgatcca 282  Q
     |||||||||    
T  34626417 gattgatcca 34626408  T

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