View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_21 (Length: 362)
Name: NF5229_low_21
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 35497659 - 35497338
Alignment:
| Q |
1 |
gtactaaagtacatggaataggcacaggtatgtcacttaaatgcacacagggtatggagacagagtaaaattgctgcctacaaagtatgaactcggatac |
100 |
Q |
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| T |
35497659 |
gtactaaagtacatggaataggcacaggtatgtcacttaaatgcacacagggtatggagacagagtaaaattgctgcctacaaagtatgaactcggatac |
35497560 |
T |
|
| Q |
101 |
aaacatgtttgttttacagatacagatatcgggacgagtattatagtatctatccattggggacattgccatccctcacgtgatgtgcagcacctaaaat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
35497559 |
aaacatgtttgttttacagatgcagatatcgggacgagtattatagtatc--------------------atccctcacgtgatgtgcagctcctaaaat |
35497480 |
T |
|
| Q |
201 |
catgatttacttatccatacaactaaaagcctacaatctaggtgaagagataaagaggctagtgcgagtggaatggcggtggtgaattaaattgagaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35497479 |
catgatttacttatccatacaactaaaagcctacaatctatgtgaagagataaagaggctagtgcgagtggaatggcggtggtgaattaaattgagaaga |
35497380 |
T |
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| Q |
301 |
atagagcaccacattacatatcgcgtataccacaatactaag |
342 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35497379 |
atagagcaccacattacatatcgcgaataccacaatactaag |
35497338 |
T |
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