View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_low_24 (Length: 350)

Name: NF5229_low_24
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_low_24
NF5229_low_24
[»] chr3 (3 HSPs)
chr3 (1-340)||(35497673-35498012)
chr3 (194-279)||(29246722-29246811)
chr3 (107-167)||(29246877-29246937)
[»] chr7 (2 HSPs)
chr7 (107-324)||(11210997-11211217)
chr7 (234-324)||(46254001-46254091)
[»] chr1 (1 HSPs)
chr1 (107-167)||(36658352-36658412)
[»] chr5 (1 HSPs)
chr5 (107-167)||(32520092-32520152)
[»] chr2 (2 HSPs)
chr2 (234-272)||(29717312-29717350)
chr2 (107-164)||(35976011-35976068)
[»] chr4 (1 HSPs)
chr4 (41-82)||(19444434-19444475)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 35498012 - 35497673
Alignment:
Q  1 tgatgagcaggataaacacatgcatttatgattctgagtttgggcacggataattacccatatatttgaatggatatgagtgtcggtacagccaatctta 100  Q
    ||||| ||||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  35498012 tgatgggcaggataaacacatgcatttatgagttcgagtttgggctcggataattacccatatatttgaatgggtatgagtgtcggtacggccaatctta 35497913  T
Q  101 tatgattttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacctgaacaatcattattgctacttccttttcataag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35497912 tatgattttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacctgaacaatcataattgctacttccttttcataag 35497813  T
Q  201 ttaccgatggacatctcttcttctttgcatccatttttgttgttgtcgtgtttttatcgttagtcaactatgaatacatattgttctaaatacaaactat 300  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35497812 ttaccgatcgacatctcttcttctttgcatctatttttattgttgtcgtgtttttatcgttagtcaactatgaatatatattgttctaaatacaaactat 35497713  T
Q  301 tgaatcatctctaaattatttgttctttgttataattttt 340  Q
    ||||||||||||||||||||||||  |||||||| |||||    
T  35497712 tgaatcatctctaaattatttgttaattgttatatttttt 35497673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 29246811 - 29246722
Alignment:
Q  194 tcataagttaccgatggacatctcttcttcttt---gcatccatttt-tgttgttgtcgtgtttttatcgttagtcaactatgaatacat 279  Q
    ||||||| ||| ||| |||||||||| ||||||   ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||    
T  29246811 tcataagctactgatcgacatctcttgttcttttgtgcatccattttctgttgttgtcttgtttttatcgttagtcaactatggatacat 29246722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 29246937 - 29246877
Alignment:
Q  107 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacct 167  Q
    ||||||| |||||| |||||||||| |||||   ||||||| ||||| |||||||||||||    
T  29246937 tttaaatgtatatatcattaaagttaattaatcgtaaacttttttacaattatttaaacct 29246877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 11210997 - 11211217
Alignment:
Q  107 tttaaatttatataccattaaagttgattaaatataaacttctttactattatt------taaacctgaacaatcattattgctacttccttttcataag 200  Q
    ||||||||||||||||||||||| ||||||| | ||||| | |||| |||||||      ||||||| ||||||| || ||| | |||| || || || |    
T  11210997 tttaaatttatataccattaaagatgattaattgtaaacatttttattattatttaaatctaaacctaaacaatcgttgttgttgcttctttctcttatg 11211096  T
Q  201 -ttaccgatggacatctcttcttctttgcatccatttttgttgttgtcgtgtttttatcgttagtcaactatgaatacatattgttctaaatacaaacta 299  Q
     |||||||| ||||||||||||| | ||||||||||||   ||||||  | |||||||||||||||||||||| ||  || | |||  ||||| ||| |     
T  11211097 cttaccgatcgacatctcttcttttgtgcatccatttt--ctgttgttttatttttatcgttagtcaactatggat--atgtggtttcaaatagaaattg 11211192  T
Q  300 ttgaatcatctctaaattatttgtt 324  Q
    |||||||||||||||||||||||||    
T  11211193 ttgaatcatctctaaattatttgtt 11211217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 46254001 - 46254091
Alignment:
Q  234 tttttgttgttgtcgtgtttttatcgttagtcaactatgaatacatattgttctaaatacaaactattgaatcatctctaaattatttgtt 324  Q
    |||||||| ||||| | |||||||| ||||||||||||| | |||||| |||  ||||||||| | |||||||||||||||||||||||||    
T  46254001 tttttgttcttgtcttatttttatcattagtcaactatggagacatatggtttcaaatacaaattgttgaatcatctctaaattatttgtt 46254091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 36658412 - 36658352
Alignment:
Q  107 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacct 167  Q
    |||| ||||||||| |||||||||||||||| | ||||| | |||||||||||||||||||    
T  36658412 tttatatttatatatcattaaagttgattaagtgtaaacatttttactattatttaaacct 36658352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 32520092 - 32520152
Alignment:
Q  107 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaacct 167  Q
    ||||||| || |||||||||||||||||||| | ||||||| ||||  |||||||||||||    
T  32520092 tttaaatctacataccattaaagttgattaattgtaaacttttttataattatttaaacct 32520152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 29717312 - 29717350
Alignment:
Q  234 tttttgttgttgtcgtgtttttatcgttagtcaactatg 272  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  29717312 tttttcttgttgtcttgtttttatcgttagtcaactatg 29717350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 35976011 - 35976068
Alignment:
Q  107 tttaaatttatataccattaaagttgattaaatataaacttctttactattatttaaa 164  Q
    ||||||||||||||||||||||||  ||||| | ||||||| ||||| | ||||||||    
T  35976011 tttaaatttatataccattaaagtcaattaattgtaaacttttttacaaatatttaaa 35976068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 19444434 - 19444475
Alignment:
Q  41 tgggcacggataattacccatatatttgaatggatatgagtg 82  Q
    |||||||||||||||||||| | |||||||||| ||||||||    
T  19444434 tgggcacggataattacccacaaatttgaatgggtatgagtg 19444475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University