View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_26 (Length: 331)
Name: NF5229_low_26
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 33535384 - 33535664
Alignment:
| Q |
30 |
cacagaaccagtagcagatttctgacccagaagtgcaaatgaattatgtgttgttaaccatgaataccgattaaatggcaacccttttacctgtataaaa |
129 |
Q |
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| T |
33535384 |
cacagaaccagtagcagatttctgacccagaagtgcaaatgaattatgtgttgttaaccatgaataccgattaaatggcaacccttttacctgtataaaa |
33535483 |
T |
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| Q |
130 |
accaatactttacaatgttaggtaccaaaccaacacattcatagcacaggaaaacttcaaaatcaacataacaataatattaaaagcaatgaaagaaaca |
229 |
Q |
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| T |
33535484 |
accaatactttacaatgttaggtaccaaaccaacacattcatagcacaggaaaacttcaaaatgaacataacaataatattaaaagcaatgaaagaaaca |
33535583 |
T |
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| Q |
230 |
aaaaggtgagacctttgaagtggggtttgttggttgaatacgagtgcatcttggtcgcacgtttccatttgcaacacatgt |
310 |
Q |
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| T |
33535584 |
aaaaggtgagacctttgaagtggggtttgttggttgaatacgagtgcatcttggtcgcacgtttccatttgcaacacatgt |
33535664 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 6215443 - 6215483
Alignment:
| Q |
64 |
gcaaatgaattatgtgttgttaaccatgaataccgattaaa |
104 |
Q |
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| T |
6215443 |
gcaaatgaattatgtgtcgttaaccatgaataccgattaaa |
6215483 |
T |
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