View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_34 (Length: 284)
Name: NF5229_low_34
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 39497980 - 39498226
Alignment:
| Q |
7 |
atttcgacattgaagtatcatttgtttggagacaaataaataagattgcttatagcattgttaaacctcccttatccgatcttagtccccatacttttca |
106 |
Q |
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| T |
39497980 |
atttcgacattgaagtgttgtttgtttggagacaaataaataagattgcttatagtattgttaaatcttccttattcgatcttaacctccatactttaca |
39498079 |
T |
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| Q |
107 |
aaatatatctcctattttatactcttgattatgatgaaatacaataattttgccttggctcaaaacaataaagaaaaataaattcttgttc--nnnnnnn |
204 |
Q |
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|||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
39498080 |
aaatgtatctcctattttatacttttgattataatgaaatacaataattttgccttggctcaaaacaataaagaaaaagaaatttttgttcaaaaaaaaa |
39498179 |
T |
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| Q |
205 |
nntttaactttgtggaattttatttgtgtccttacaaattataattg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39498180 |
aaattaactttgtggaattttatttgtgtccttacaaattataattg |
39498226 |
T |
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