View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_35 (Length: 278)
Name: NF5229_low_35
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 15683243 - 15683504
Alignment:
| Q |
1 |
tgactgtgagtgtgaaaagttggaagtttgtgtggggtatggtttgaatgcaagaaaaggatgaaaatttagaatttgagtatgttgagtctagaccgaa |
100 |
Q |
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| T |
15683243 |
tgactgtgagtgtgaaaagttggaagtttgtgtggggtatggcttgaatgcaagaaaaggatgaaaatttagagtttgagtatgttgagtctagaccgaa |
15683342 |
T |
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| Q |
101 |
atttgtgtgatgaagataaaagtctgaatgaagtcaagggctttttagtttaaaaatttacccgttaaatatgtttttgatcattataaatatttcaaaa |
200 |
Q |
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| T |
15683343 |
atttgtgtgatgaagataaaagtctgaatgaagtcaagggctttttggtttaaaaattcacccgttaaatatgtttttgatcattataaatattccaaaa |
15683442 |
T |
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| Q |
201 |
cattttagtttttctaacattttcatttgagatttggtctcaaaaatttatgccatcatttt |
262 |
Q |
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| T |
15683443 |
cattttagtttttctaacattttcatttgagatttggtctcaaaaatttatgccatcatttt |
15683504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 30477136 - 30477170
Alignment:
| Q |
164 |
gttaaatatgtttttgatcattataaatatttcaa |
198 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
30477136 |
gttaaatatgtttttgatcattataaatatatcaa |
30477170 |
T |
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