View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_low_41 (Length: 249)

Name: NF5229_low_41
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_low_41
NF5229_low_41
[»] chr5 (4 HSPs)
chr5 (85-236)||(9814845-9814996)
chr5 (100-236)||(26355101-26355237)
chr5 (1-83)||(9815071-9815153)
chr5 (88-128)||(38435286-38435326)
[»] chr3 (17 HSPs)
chr3 (145-236)||(19950932-19951023)
chr3 (146-236)||(19853320-19853410)
chr3 (111-236)||(19838192-19838317)
chr3 (111-236)||(19955883-19956008)
chr3 (85-233)||(19818368-19818516)
chr3 (89-233)||(19812091-19812235)
chr3 (4-83)||(19812314-19812393)
chr3 (145-236)||(20016418-20016509)
chr3 (145-237)||(19989329-19989421)
chr3 (4-83)||(19849024-19849106)
chr3 (4-83)||(20036605-20036687)
chr3 (1-57)||(20046183-20046239)
chr3 (27-87)||(24840002-24840062)
chr3 (145-221)||(26646833-26646909)
chr3 (1-57)||(26653212-26653268)
chr3 (4-83)||(30914677-30914756)
chr3 (146-236)||(19857879-19857969)
[»] chr1 (1 HSPs)
chr1 (147-236)||(1717022-1717111)
[»] chr4 (1 HSPs)
chr4 (1-83)||(6398295-6398377)
[»] chr8 (3 HSPs)
chr8 (173-218)||(11564381-11564426)
chr8 (4-83)||(22685685-22685764)
chr8 (30-83)||(22652119-22652172)
[»] chr7 (3 HSPs)
chr7 (1-83)||(12497243-12497325)
chr7 (1-83)||(12521108-12521190)
chr7 (1-83)||(12581426-12581508)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 9814996 - 9814845
Alignment:
Q  85 ttctgtcttgcaagaatcaacttctcttccacctctctcatttcccggcatttaacatctatgaaaataggatcaccgatgacaggataaccccccaaaa 184  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9814996 ttctgtctagcaagaatcaacttctcttccacctctctcatttcccggcctttaacatctatgaaaataggatcaccgatgacaggataaccccccaaaa 9814897  T
Q  185 ccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9814896 ccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgt 9814845  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 26355101 - 26355237
Alignment:
Q  100 atcaacttctcttccacctctctcatttcccggcatttaacatctatgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctcca 199  Q
    |||| ||||| ||||||| |||||||||| |||  ||||||||    ||||||||||||||| |||||||| |||||||| | |||||||||||||||||    
T  26355101 atcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccaagaaccataacatcctcca 26355200  T
Q  200 aactaatcgtcgcctcaccaaacggaaacacaaatgt 236  Q
    |||  | ||||||||||||||||||||||||||||||    
T  26355201 aacctaccgtcgcctcaccaaacggaaacacaaatgt 26355237  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9815153 - 9815071
Alignment:
Q  1 agaaaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||||||||||||||||||||||||||||||||  |||||||| |||| ||||||| ||||||||||||||||||||||||    
T  9815153 agaaaacaaagaacttttcaccaaagatttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaa 9815071  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 38435286 - 38435326
Alignment:
Q  88 tgtcttgcaagaatcaacttctcttccacctctctcatttc 128  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  38435286 tgtcttgcaagtatcaatttcttttccacctctctcatttc 38435326  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 19951023 - 19950932
Alignment:
Q  145 atgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgt 236  Q
    ||||||| ||||||||| |  ||||| |||||||||||||||||||||||||||||| | || || ||||||||||| ||||||||||||||    
T  19951023 atgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgt 19950932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 19853410 - 19853320
Alignment:
Q  146 tgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgt 236  Q
    |||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| | || || || |||||||| || |||||||||||    
T  19853410 tgaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgt 19853320  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 19838317 - 19838192
Alignment:
Q  111 ttccacctctctcatttcccggcatttaacatctatgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtc 210  Q
    ||||||||||||||||||  ||  ||| || ||  |||||| || |||||| |||||||| ||||||||||||||||| ||||| |||||| | || ||     
T  19838317 ttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgtt 19838218  T
Q  211 gcctcaccaaacggaaacacaaatgt 236  Q
    ||||||||||| ||||||||||||||    
T  19838217 gcctcaccaaatggaaacacaaatgt 19838192  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 19956008 - 19955883
Alignment:
Q  111 ttccacctctctcatttcccggcatttaacatctatgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtc 210  Q
    ||||||||||||||||||  ||  ||| || ||  |||||| || |||||| |||||||| ||||||||||||||||| ||||| |||||| | || ||     
T  19956008 ttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgtt 19955909  T
Q  211 gcctcaccaaacggaaacacaaatgt 236  Q
    ||||||||||| ||||||||||||||    
T  19955908 gcctcaccaaatggaaacacaaatgt 19955883  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 19818516 - 19818368
Alignment:
Q  85 ttctgtcttgcaagaatcaacttctcttccacctctctcatttcccggcatttaacatctatgaaaataggatcaccgatgacaggataaccccccaaaa 184  Q
    |||||||||||||  || | ||||| ||| ||||||||||||||  |   |||||| |  ||||||| ||||||||| |||| |||||||||||||||||    
T  19818516 ttctgtcttgcaatgatgagcttcttttcaacctctctcatttcttgatctttaactttgatgaaaacaggatcaccaatgataggataaccccccaaaa 19818417  T
Q  185 ccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaa 233  Q
    | || |||||||||||| | || || ||||||||||| ||||| |||||    
T  19818416 ctatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaa 19818368  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 19812235 - 19812091
Alignment:
Q  89 gtcttgcaagaatcaacttctcttccacctctctcatttcccggcatttaacatctatgaaaataggatcaccgatgacaggataaccccccaaaaccat 188  Q
    |||||||||| || | ||||| ||||||||||||||||||  ||  || ||| |   | |||||||||||||| |||| ||| |||||||||||||||||    
T  19812235 gtcttgcaaggatgagcttcttttccacctctctcatttcttggtcttgaactttggtaaaaataggatcaccaatgatagggtaaccccccaaaaccat 19812136  T
Q  189 aacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaa 233  Q
    || |||||||||| | || || || |||||||| ||||| |||||    
T  19812135 aatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaa 19812091  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 19812393 - 19812314
Alignment:
Q  4 aaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||| ||||||  ||||||  || |||||||| ||||    
T  19812393 aaacaaagactttttcaccaaatatttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaa 19812314  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 20016418 - 20016509
Alignment:
Q  145 atgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgt 236  Q
    ||||||| |||||| || |||||||| ||||| ||||||||||||| |||||||||| | || || || ||| |||| ||||||||||||||    
T  20016418 atgaaaacaggatcgccaatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgt 20016509  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 19989421 - 19989329
Alignment:
Q  145 atgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtg 237  Q
    ||||||| ||||||||| |  | ||| |||||||| |||||||||||||| |||||| | || || ||||||||||| ||||| |||||||||    
T  19989421 atgaaaacaggatcaccaagaatagggtaaccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtg 19989329  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 19849106 - 19849024
Alignment:
Q  4 aaacaaagaacttttcaccaaaga---tttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||||||||||||||||||| |   |||||||||||||||||||| || ||||||  ||||||  || |||||||| ||||    
T  19849106 aaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaa 19849024  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 20036605 - 20036687
Alignment:
Q  4 aaacaaagaacttttcaccaaaga---tttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||||||||||||||||||| |   |||||||||||||||||||| || ||||||  ||||||  || |||||||| ||||    
T  20036605 aaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaa 20036687  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20046239 - 20046183
Alignment:
Q  1 agaaaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaacca 57  Q
    |||||||||| || ||||||||| |  ||||||||||||||||||||||| ||||||    
T  20046239 agaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaattgacaacca 20046183  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 24840002 - 24840062
Alignment:
Q  27 atttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaacttc 87  Q
    |||||||||| ||||||||||||| ||||||  ||||||  || |||||||||||||||||    
T  24840002 atttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttc 24840062  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 26646909 - 26646833
Alignment:
Q  145 atgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaa 221  Q
    ||||||| |||||| || || | ||||||||||||||||||||| | |||||||||| |||| || || ||||||||    
T  26646909 atgaaaacaggatccccaataataggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaa 26646833  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26653268 - 26653212
Alignment:
Q  1 agaaaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaacca 57  Q
    ||||||||||||||||||||| ||   | ||||||||||||||||||||| ||||||    
T  26653268 agaaaacaaagaacttttcactaattctatatgaggaaaaacaaaaattgacaacca 26653212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 30914756 - 30914677
Alignment:
Q  4 aaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    ||||||| ||||||||||||||  ||| ||||| ||||||||||||| ||||||  ||| || ||| |||||||| ||||    
T  30914756 aaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaa 30914677  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 19857969 - 19857879
Alignment:
Q  146 tgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgt 236  Q
    |||||| ||||||||| | || ||  |||||||||||||||| ||||||||| | | |||| || || |||||||| |||||||| |||||    
T  19857969 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgt 19857879  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 1717111 - 1717022
Alignment:
Q  147 gaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgt 236  Q
    ||||| ||||||||| |||||||| ||| |||| |||||||||| |||||||||| | || || || |||||||| ||||||||||||||    
T  1717111 gaaaacaggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgt 1717022  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6398377 - 6398295
Alignment:
Q  1 agaaaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||||||| ||||||||||||  | ||||  ||||||||||||||||  |||||| ||||||| ||| |||||||| ||||    
T  6398377 agaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaa 6398295  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 11564381 - 11564426
Alignment:
Q  173 aaccccccaaaaccataacatcctccaaactaatcgtcgcctcacc 218  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||    
T  11564381 aaccccccaaaaccataacatcctccagaatgatcgtcgcctcacc 11564426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 22685685 - 22685764
Alignment:
Q  4 aaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    ||||| |||| |||||||||||  |||||||||||||||||||| || ||||||   |||||  || |||||||||||||    
T  22685685 aaacatagaagttttcaccaaaattttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatgcttcatgctcaa 22685764  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 22652119 - 22652172
Alignment:
Q  30 tatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||| |||||||||||||| ||||||  |||||| |||||||||||| ||||    
T  22652119 tatgagcaaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaa 22652172  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12497325 - 12497243
Alignment:
Q  1 agaaaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||||||| ||||| ||||||    | ||||||||||||||||||||| ||||||  |||||| ||| |||||||| ||||    
T  12497325 agaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaa 12497243  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12521190 - 12521108
Alignment:
Q  1 agaaaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||||||| ||||| ||||||    | ||||||||||||||||||||| ||||||  |||||| ||| |||||||| ||||    
T  12521190 agaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaa 12521108  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12581508 - 12581426
Alignment:
Q  1 agaaaacaaagaacttttcaccaaagatttatgaggaaaaacaaaaattggcaaccacttagcaatgaacgcttcatgctcaa 83  Q
    |||||||||| ||||||||||||    | || |||||||||||||||||| ||||||  |||||| ||| |||||||| ||||    
T  12581508 agaaaacaaataacttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaa 12581426  T

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