View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_42 (Length: 248)
Name: NF5229_low_42
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 41876954 - 41876729
Alignment:
| Q |
7 |
ttatttataaattcaaataaatggtatgtaaaatactcaagttgtataaattttgaattaattcaaatatattttatttcaaattagtaaatgctagtag |
106 |
Q |
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| T |
41876954 |
ttatttgtaaattcaaataaatggtatgtaaaatactcaagttgtataaatttcgaattaattcaaatatattttattttaaattagtaaatgctagtag |
41876855 |
T |
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| Q |
107 |
cattgagata---atccacacaaacttttacatcagtaattgaataataacgaaaagtcattttgatttgttcaaataattccaaagcactgccatatca |
203 |
Q |
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| T |
41876854 |
cattgagatattaatccacacaaacttttacatcagtaattgaataataacgaaaagtcattttgatttgttcaaataattccaaagcactgccatatca |
41876755 |
T |
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| Q |
204 |
acattgccacctgaaattactattcc |
229 |
Q |
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| T |
41876754 |
acattgccacctgaaattactattcc |
41876729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 40867242 - 40867316
Alignment:
| Q |
155 |
gaaaagtcattttgatttgttcaaataattccaaagcactgccatatcaacattgccacctgaaattactattcc |
229 |
Q |
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| T |
40867242 |
gaaaagtcaatttcatttgttcagagaatcccaaagcacggccatatcaacatttccacctgacactactattcc |
40867316 |
T |
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