View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_low_46 (Length: 246)

Name: NF5229_low_46
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_low_46
NF5229_low_46
[»] chr6 (14 HSPs)
chr6 (1-139)||(32250219-32250354)
chr6 (131-246)||(32253726-32253842)
chr6 (184-246)||(23653902-23653964)
chr6 (185-244)||(31077793-31077853)
chr6 (183-246)||(32853153-32853217)
chr6 (183-246)||(2242030-2242095)
chr6 (186-246)||(5570342-5570403)
chr6 (183-246)||(14094701-14094765)
chr6 (183-246)||(15722512-15722576)
chr6 (183-246)||(17417244-17417308)
chr6 (183-246)||(26668494-26668558)
chr6 (185-246)||(31368617-31368679)
chr6 (218-246)||(33635909-33635937)
chr6 (218-246)||(34442071-34442099)
[»] chr7 (13 HSPs)
chr7 (185-242)||(11325898-11325955)
chr7 (183-244)||(36920802-36920863)
chr7 (182-246)||(32933545-32933609)
chr7 (184-246)||(13152592-13152655)
chr7 (186-246)||(34349036-34349097)
chr7 (183-242)||(47012582-47012643)
chr7 (183-246)||(16567314-16567378)
chr7 (183-246)||(16598284-16598348)
chr7 (218-246)||(18111620-18111648)
chr7 (183-246)||(18157194-18157258)
chr7 (218-246)||(34108863-34108891)
chr7 (183-246)||(38023433-38023497)
chr7 (218-246)||(40854663-40854691)
[»] chr5 (16 HSPs)
chr5 (183-246)||(7076577-7076641)
chr5 (183-246)||(18660757-18660821)
chr5 (184-246)||(27340868-27340931)
chr5 (183-246)||(32912036-32912101)
chr5 (183-246)||(1671540-1671604)
chr5 (183-246)||(34693225-34693289)
chr5 (185-246)||(22649670-22649732)
chr5 (183-246)||(11148509-11148574)
chr5 (183-246)||(19981994-19982059)
chr5 (186-242)||(30103464-30103521)
chr5 (184-246)||(6940158-6940222)
chr5 (184-246)||(17097810-17097874)
chr5 (183-246)||(20985538-20985602)
chr5 (218-246)||(34379488-34379516)
chr5 (183-246)||(38493623-38493687)
chr5 (183-246)||(38500941-38501005)
[»] chr4 (25 HSPs)
chr4 (184-246)||(40348793-40348856)
chr4 (184-246)||(31559537-31559601)
chr4 (184-246)||(31804338-31804401)
chr4 (185-246)||(55996422-55996484)
chr4 (183-246)||(39158103-39158168)
chr4 (183-246)||(37297047-37297111)
chr4 (183-242)||(50050636-50050696)
chr4 (183-246)||(50890082-50890146)
chr4 (185-246)||(149493-149556)
chr4 (183-245)||(9162064-9162127)
chr4 (184-246)||(45082980-45083043)
chr4 (208-246)||(17805476-17805514)
chr4 (184-246)||(29531615-29531677)
chr4 (185-246)||(30866353-30866415)
chr4 (186-242)||(336820-336877)
chr4 (185-244)||(14443198-14443259)
chr4 (185-246)||(52456936-52456997)
chr4 (183-246)||(193531-193595)
chr4 (218-246)||(22027450-22027478)
chr4 (183-246)||(36444404-36444468)
chr4 (183-246)||(48743708-48743772)
chr4 (214-246)||(52911798-52911830)
chr4 (182-246)||(55510857-55510921)
chr4 (183-246)||(55609174-55609238)
chr4 (218-246)||(56557768-56557796)
[»] chr1 (29 HSPs)
chr1 (183-242)||(8828135-8828194)
chr1 (174-246)||(43755687-43755760)
chr1 (183-246)||(37619542-37619606)
chr1 (184-246)||(27563483-27563546)
chr1 (184-246)||(34941929-34941992)
chr1 (185-246)||(2362356-2362418)
chr1 (183-244)||(15083061-15083123)
chr1 (185-246)||(40118724-40118786)
chr1 (209-246)||(48470664-48470701)
chr1 (183-246)||(44672039-44672103)
chr1 (185-246)||(5771756-5771819)
chr1 (208-246)||(8845997-8846036)
chr1 (182-246)||(30535988-30536054)
chr1 (184-246)||(34157519-34157581)
chr1 (212-246)||(37515944-37515978)
chr1 (185-246)||(43105105-43105167)
chr1 (183-246)||(4213070-4213135)
chr1 (183-244)||(24136935-24136996)
chr1 (184-244)||(45333569-45333630)
chr1 (183-246)||(8350205-8350269)
chr1 (183-246)||(27352628-27352692)
chr1 (183-246)||(29489368-29489432)
chr1 (214-246)||(32196668-32196700)
chr1 (183-246)||(35369698-35369762)
chr1 (183-246)||(37843441-37843505)
chr1 (218-246)||(47215737-47215765)
chr1 (183-246)||(49596233-49596297)
chr1 (218-246)||(50824776-50824804)
chr1 (183-242)||(51703465-51703525)
[»] chr8 (22 HSPs)
chr8 (183-246)||(7678730-7678794)
chr8 (185-246)||(13884169-13884231)
chr8 (183-246)||(10692437-10692501)
chr8 (183-246)||(24479234-24479298)
chr8 (183-246)||(42716318-42716382)
chr8 (184-246)||(36064029-36064092)
chr8 (185-246)||(41406865-41406927)
chr8 (218-246)||(9549207-9549235)
chr8 (183-246)||(9738702-9738766)
chr8 (218-246)||(12735020-12735048)
chr8 (186-245)||(17492530-17492590)
chr8 (218-246)||(18651405-18651433)
chr8 (212-244)||(20065644-20065676)
chr8 (183-246)||(26294187-26294251)
chr8 (183-246)||(26307444-26307508)
chr8 (183-246)||(27630895-27630959)
chr8 (183-246)||(32725789-32725853)
chr8 (183-246)||(33863257-33863321)
chr8 (183-246)||(34473947-34474011)
chr8 (182-239)||(35792066-35792125)
chr8 (183-246)||(43715873-43715937)
chr8 (183-246)||(44825441-44825505)
[»] chr3 (23 HSPs)
chr3 (183-246)||(49196694-49196758)
chr3 (185-246)||(6178434-6178496)
chr3 (185-246)||(48205045-48205107)
chr3 (186-242)||(40419655-40419712)
chr3 (183-246)||(42358647-42358711)
chr3 (183-246)||(52727457-52727521)
chr3 (184-246)||(7351647-7351710)
chr3 (184-246)||(20547999-20548062)
chr3 (185-246)||(31017403-31017465)
chr3 (185-246)||(32457764-32457826)
chr3 (185-246)||(38671618-38671680)
chr3 (186-246)||(41308926-41308987)
chr3 (183-246)||(41443199-41443264)
chr3 (183-246)||(7223-7287)
chr3 (183-246)||(108429-108493)
chr3 (218-246)||(8846526-8846554)
chr3 (218-246)||(10464978-10465006)
chr3 (183-246)||(16479630-16479694)
chr3 (183-246)||(27198169-27198233)
chr3 (183-246)||(35376560-35376624)
chr3 (218-246)||(40367643-40367671)
chr3 (218-246)||(45711448-45711476)
chr3 (183-246)||(47849670-47849734)
[»] chr2 (22 HSPs)
chr2 (184-246)||(13711060-13711123)
chr2 (185-246)||(12600048-12600110)
chr2 (184-244)||(1573704-1573764)
chr2 (186-246)||(8555300-8555360)
chr2 (187-246)||(41195586-41195646)
chr2 (183-246)||(41353506-41353570)
chr2 (188-246)||(5361798-5361856)
chr2 (184-246)||(9207589-9207652)
chr2 (184-246)||(13553146-13553209)
chr2 (185-246)||(3091741-3091803)
chr2 (185-246)||(22888830-22888892)
chr2 (217-246)||(10711758-10711787)
chr2 (186-246)||(34945099-34945160)
chr2 (217-246)||(42607539-42607568)
chr2 (182-246)||(43487376-43487441)
chr2 (183-246)||(1889145-1889209)
chr2 (183-246)||(18846612-18846673)
chr2 (183-246)||(27490739-27490803)
chr2 (183-234)||(32477330-32477382)
chr2 (183-246)||(34139047-34139111)
chr2 (183-246)||(35171235-35171299)
chr2 (183-246)||(36132972-36133036)
[»] scaffold0154 (1 HSPs)
scaffold0154 (184-245)||(9858-9920)
[»] scaffold0036 (1 HSPs)
scaffold0036 (183-244)||(18002-18064)
[»] scaffold0119 (1 HSPs)
scaffold0119 (183-246)||(2235-2299)
[»] scaffold0098 (1 HSPs)
scaffold0098 (183-246)||(49293-49357)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 32250354 - 32250219
Alignment:
Q  1 tcatcatggtgagccacccttcattcggcgacacaagtaaattgtttgaaaaaagccaaacacatacgatcaagaaagnnnnnnnnntcaacacacaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||          |||||||||||||    
T  32250354 tcatcatggtgagccacccttcattcggcgacacaagtaaattctttgaaaaaagccaaacacatacgatcaagaaa---aaaaaaatcaacacacaatt 32250258  T
Q  101 ctttcattttgtttggagataatcgctcttaaacttggg 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32250257 ctttcattttgtttggagataatcgctcttaaacttggg 32250219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 32253726 - 32253842
Alignment:
Q  131 aaacttgggtggtgatgggtgttcatgtgagacaatgagtaaggttttatggaagagaaatgatattcgtactatca-tttttgataattttgtgacaat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | || |||||||||||||||||| |||    
T  32253726 aaacttgggtggtgatgggtgttcatgtgagacaatgagtaagattttatggaagagaaatgatatttgtacaaccactttttgataattttgtgataat 32253825  T
Q  230 tttctctctcatactca 246  Q
    |||||||||||||||||    
T  32253826 tttctctctcatactca 32253842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 23653964 - 23653902
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| ||| |||||||||| |||  ||||| |||||||||||||||||    
T  23653964 agagaaatgatatttgtacaatcttttttgataacttttagacaactttctctctcatactca 23653902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 31077793 - 31077853
Alignment:
Q  185 gagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatact 244  Q
    ||||||||||||| | || ||||||||| |||| ||||||||||| |||||||||||||||    
T  31077793 gagaaatgatatttgaacaatcattttttataaattttgtgacaactttctctctcatact 31077853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 32853217 - 32853153
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||| ||||| |||| |||| ||||||| || |||||||||| |||||||||||||||||    
T  32853217 aagagaaattatatttgtacaatcactttttgacaactttgtgacaactttctctctcatactca 32853153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 2242095 - 2242030
Alignment:
Q  183 aagagaaatgatattcgtactatcattttt-gataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || ||||||||| || |||||| ||||||| |||||||||||||||||    
T  2242095 aagagaaatgatatttgaacaatcattttttgacaatttttgtgacaactttctctctcatactca 2242030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 5570403 - 5570342
Alignment:
Q  186 agaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    |||||||||||| | || | ||||||| | |||||| |||||||||||||||||||||||||    
T  5570403 agaaatgatatttgaacaaccattttttacaatttttgtgacaattttctctctcatactca 5570342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 14094765 - 14094701
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||  ||| || |||||| |||| ||||| || ||||||||||||||||||||    
T  14094765 aagagaaatgatatttatacaattattttttataacttttgcgataattttctctctcatactca 14094701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 15722576 - 15722512
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |||||||| ||| || ||| ||||||  ||||||||||||||||    
T  15722576 aagagaaatgatatttgtacaatcattttgtgacaactttttgacaaccttctctctcatactca 15722512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 17417308 - 17417244
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |||||| | ||| ||||||  ||||| |||||||||||||||||    
T  17417308 aagagaaatgatatttgtacaatcattatgtgacaatttttggacaactttctctctcatactca 17417244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 26668494 - 26668558
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| ||||||||   |||||||| ||| |||||||||||| |||||||    
T  26668494 aagagaaatgatatttgtacaatcattttgctataattttttgataattttctctcttatactca 26668558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 31368679 - 31368617
Alignment:
Q  185 gagaaatgatattcgtactatcatttttg--ataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| | ||||||||  |||||||| |||||||||||| |||||||||||    
T  31368679 gagaaatgatatttgtacaaccatttttgttataatttt-tgacaattttctatctcatactca 31368617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 33635937 - 33635909
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  33635937 ttttgtgacaattttctctctcatactca 33635909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 34442099 - 34442071
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  34442099 ttttgtgacaattttctctctcatactca 34442071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 11325898 - 11325955
Alignment:
Q  185 gagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcata 242  Q
    ||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||    
T  11325898 gagaaatgatatttgtacaattatttttgacaattttgtgacaattttctctctcata 11325955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 36920802 - 36920863
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatact 244  Q
    ||||||||||||||| |||||| ||||||| | |||||| |||||| |||||||||||||||    
T  36920802 aagagaaatgatatttgtactaccatttttaacaattttttgacaactttctctctcatact 36920863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 32933545 - 32933609
Alignment:
Q  182 gaagagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||| |||| || |||| ||| || ||| ||||||||||||||||||||||||    
T  32933545 gaagagaaatgatatttgtacaattatttgtgacaaatttttgacaattttctctctcatactca 32933609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 13152592 - 13152655
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| | || | ||||||||| || ||||||||||| |||||||||||||||||    
T  13152592 agagaaatgatatttgaacaaccatttttgacaacttttgtgacaactttctctctcatactca 13152655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 34349097 - 34349036
Alignment:
Q  186 agaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||| |||| | |||||||| | || ||| ||||||||||||||||||||||||    
T  34349097 agaaatgatatttgtacaaccatttttgtacaactttttgacaattttctctctcatactca 34349036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 47012643 - 47012582
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataatttt-gtgacaattttctctctcata 242  Q
    ||||||||||||||| |||| |||||||| | |||||||| ||||||||||| |||||||||    
T  47012643 aagagaaatgatatttgtacaatcattttctaataatttttgtgacaattttatctctcata 47012582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 16567314 - 16567378
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| | |||| ||| |||||||||||||| |||||||||    
T  16567314 aagagaaatgatatttgtacaaccattttattataactttttgacaattttctctttcatactca 16567378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 16598348 - 16598284
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| | |||| ||| |||||||||||||| |||||||||    
T  16598348 aagagaaatgatatttgtacaaccattttattataactttttgacaattttctctttcatactca 16598284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 18111648 - 18111620
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  18111648 ttttgtgacaattttctctctcatactca 18111620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 18157258 - 18157194
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    |||||| |||||||| |||| | || ||| ||||||||||  |||||||||||||||||||||||    
T  18157258 aagagacatgatatttgtacaaccactttgtgataatttttagacaattttctctctcatactca 18157194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 34108891 - 34108863
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  34108891 ttttgtgacaattttctctctcatactca 34108863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 38023497 - 38023433
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | || ||| ||||||||||  ||||| |||||||||||||||||    
T  38023497 aagagaaatgatatttgtacaaccactttgtgataatttttagacaactttctctctcatactca 38023433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 40854691 - 40854663
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  40854691 ttttgtgacaattttctctctcatactca 40854663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 7076641 - 7076577
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || ||||||||| |||||||| |||||||||||||||||||||||||    
T  7076641 aagagaaatgatatttgaacaatcattttttataatttttgtgacaattttctctctcatactca 7076577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 18660757 - 18660821
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || | ||||||||| || |||||||||||||||||||||||||||||    
T  18660757 aagagaaatgatatttgaacaaccatttttgacaacttttgtgacaattttctctctcatactca 18660821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 27340868 - 27340931
Alignment:
Q  184 agagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| |||| ||| | |||||||| ||||||||||||||||||||||||    
T  27340868 agagaaatgatatttgtacaatcactttattataattttttgacaattttctctctcatactca 27340931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 32912036 - 32912101
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | ||  ||||||| |||||||||| |||||||||||||||||||||||||    
T  32912036 aagagaaatgatatttgaacattcattttatgataatttttgtgacaattttctctctcatactca 32912101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 1671540 - 1671604
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || || |||||| |||||||| ||||||||||||||| |||||||||    
T  1671540 aagagaaatgatatttggacaataattttttataatttttgtgacaattttctctgtcatactca 1671604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 34693289 - 34693225
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |||||||||| ||||||||   ||||| ||||||||||||||||    
T  34693289 aagagaaatgatatttgtacaatcatttttgtataatttttgtacaatcttctctctcatactca 34693225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 22649732 - 22649670
Alignment:
Q  185 gagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||| | || | ||||||| | |||||| |||||||||||||||||||||||||    
T  22649732 gagaaatgatatttgaacaaccattttttacaatttttgtgacaattttctctctcatactca 22649670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 11148509 - 11148574
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |||| ||||||| || |||||||||||  ||||||||||||||||    
T  11148509 aagagaaatgatatttgtacaatcaatttttgacaacttttgtgacaacattctctctcatactca 11148574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 19982059 - 19981994
Alignment:
Q  183 aagagaaatgatattcgtactatcattttt-gataatttt-gtgacaattttctctctcatactca 246  Q
    |||||||||||||||   || ||||||||| ||||||||| ||||||||||| |||||||||||||    
T  19982059 aagagaaatgatattttaacaatcattttttgataatttttgtgacaattttttctctcatactca 19981994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 30103521 - 30103464
Alignment:
Q  186 agaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcata 242  Q
    |||||||||||| |||| |||||||||| ||||||||   ||||||||||||||||||    
T  30103521 agaaatgatatttgtacaatcatttttgtataatttttgtacaattttctctctcata 30103464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 6940222 - 6940158
Alignment:
Q  184 agagaaatgatattcgtactatcatttt-tgataatttt-gtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| | |||||| | |||||||| ||||||| |||||||||||||||||    
T  6940222 agagaaatgatatttgtacaaccattttataataatttttgtgacaactttctctctcatactca 6940158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 17097874 - 17097810
Alignment:
Q  184 agagaaatgatattcgtactatcattttt-gataa-ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| | || | ||||||| ||||| ||||||||||||||||| |||||||||||    
T  17097874 agagaaatgatatttgaacaaccattttttgataacttttgtgacaattttctatctcatactca 17097810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 20985602 - 20985538
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||||| ||||||||   |||| |||||||||||||||||    
T  20985602 aagagaaatgatatttgtacaaccatttttgtataatttttgtacaactttctctctcatactca 20985538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 34379488 - 34379516
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  34379488 ttttgtgacaattttctctctcatactca 34379516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 38493623 - 38493687
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| || |||| | |||| |||||||| || |||||||||||||||||    
T  38493623 aagagaaatgatatttgtacaataatttctaataacttttgtgataactttctctctcatactca 38493687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 38500941 - 38501005
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| ||| |||||| |||||| ||||||| |||||||||    
T  38500941 aagagaaatgatatttgtacaaccattttgtgacaattttttgacaactttctctttcatactca 38501005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 40348793 - 40348856
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    |||||||||||||| | || ||||||||| |||||||| |||||||||||||||||||||||||    
T  40348793 agagaaatgatatttgaacaatcattttttataatttttgtgacaattttctctctcatactca 40348856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 31559537 - 31559601
Alignment:
Q  184 agagaaatgatattcgtactatcattttt-gataatt-ttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| ||||||||| ||||||  |||||||||||||||||||||||||||    
T  31559537 agagaaatgatatttgtacaatcattttttgataatagttgtgacaattttctctctcatactca 31559601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 31804401 - 31804338
Alignment:
Q  184 agagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| |||| ||| |||||||||| ||| ||||||||||||||||||||    
T  31804401 agagaaatgatatttgtacaatcactttgtgataattttttgataattttctctctcatactca 31804338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 55996422 - 55996484
Alignment:
Q  185 gagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| |||||||| | | |||||| ||||||||||||||||||||||||    
T  55996422 gagaaatgatatttgtacaatcattttctaacaattttttgacaattttctctctcatactca 55996484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 39158103 - 39158168
Alignment:
Q  183 aagagaaatgatattcgtactatcattttt-gataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || ||||||||| ||||||||| ||||||| |||||||||||||||||    
T  39158103 aagagaaatgatatttgaacaatcattttttgataatttttgtgacaactttctctctcatactca 39158168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 37297047 - 37297111
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || | ||||||| | || |||||||||||||||||||||||||||||    
T  37297047 aagagaaatgatatttgaacaaccattttttacaacttttgtgacaattttctctctcatactca 37297111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 50050636 - 50050696
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcata 242  Q
    ||||||||||||||| | || || |||||||| |||||| |||||||||||||||||||||    
T  50050636 aagagaaatgatatttgaacaattatttttgacaatttttgtgacaattttctctctcata 50050696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 50890146 - 50890082
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |  |||||||| || ||||||||||| |||||||||||||||||    
T  50890146 aagagaaatgatatttgtacaactatttttgacaacttttgtgacaactttctctctcatactca 50890082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 149556 - 149493
Alignment:
Q  185 gagaaatgatattcgtactatca-tttttgataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||| | || |||| |||||||||||||| ||||||| |||||||||||||||||    
T  149556 gagaaatgatatttgaacaatcactttttgataatttttgtgacaactttctctctcatactca 149493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 9162064 - 9162127
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactc 245  Q
    ||||||||||||||| |||| |||||||| ||| || ||| |||||||||||||||| ||||||    
T  9162064 aagagaaatgatatttgtacaatcattttgtgacaactttttgacaattttctctctaatactc 9162127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 45082980 - 45083043
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| | || | ||||||||| || |||||||| ||||||||||||||||||||    
T  45082980 agagaaatgatatttgaacaaccatttttgacaacttttgtgataattttctctctcatactca 45083043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 17805476 - 17805514
Alignment:
Q  208 tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  17805476 tttttaataattttttgacaattttctctctcatactca 17805514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 29531677 - 29531615
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| | || | ||||||| | || |||||||||| |||||||||||||||||    
T  29531677 agagaaatgatatttgaacaaccattttttacaactttgtgacaactttctctctcatactca 29531615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 30866353 - 30866415
Alignment:
Q  185 gagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| |||||||| |||||| ||| |||||| ||||||| |||||||||    
T  30866353 gagaaatgatatttgtacaatcattttatgataaatttttgacaactttctctttcatactca 30866415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 336877 - 336820
Alignment:
Q  186 agaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcata 242  Q
    |||||||||||| |||| || |||||||| |||||| ||||||| |||||||||||||    
T  336877 agaaatgatatttgtacaattatttttgacaatttttgtgacaactttctctctcata 336820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 14443198 - 14443259
Alignment:
Q  185 gagaaatgatattcgtactatcattttt-gataa-ttttgtgacaattttctctctcatact 244  Q
    ||||||||||||| | || ||||||||| || || |||||||||||||||||||||||||||    
T  14443198 gagaaatgatatttgaacaatcattttttgacaacttttgtgacaattttctctctcatact 14443259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 52456997 - 52456936
Alignment:
Q  185 gagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| ||  ||||||| || |||  |||||||||||||||||||||||    
T  52456997 gagaaatgatatttgtacaatattttttgacaacttttagacaattttctctctcatactca 52456936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 193531 - 193595
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || ||||||||  | || |||||||||||||||||| ||||||||||    
T  193531 aagagaaatgatatttgcacaatcattttgtacaacttttgtgacaattttctccctcatactca 193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 22027478 - 22027450
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  22027478 ttttgtgacaattttctctctcatactca 22027450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 36444468 - 36444404
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| |||||| ||| | |||| |||||||||||||||||    
T  36444468 aagagaaatgatatttgtacaaccattttatgataactttttaacaactttctctctcatactca 36444404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 48743708 - 48743772
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    |||| |||||||||| |||| | || ||||| | |||||| ||||||||||||||||||||||||    
T  48743708 aagaaaaatgatatttgtacaaccaatttttaacaattttttgacaattttctctctcatactca 48743772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 52911830 - 52911798
Alignment:
Q  214 ataattttgtgacaattttctctctcatactca 246  Q
    |||||||| ||||||||||||||||||||||||    
T  52911830 ataattttttgacaattttctctctcatactca 52911798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 55510857 - 55510921
Alignment:
Q  182 gaagagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||| |||| ||||||| ||| ||||||  || || ||| |||||||||||||    
T  55510857 gaagagaaatgatatttgtacaatcatttatgacaatttttagataactttatctctcatactca 55510921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 55609238 - 55609174
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | ||||||  | || ||||||||||| |||||||||||||||||    
T  55609238 aagagaaatgatatttgtacaaccattttgtacaacttttgtgacaactttctctctcatactca 55609174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 56557768 - 56557796
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  56557768 ttttgtgacaattttctctctcatactca 56557796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 8828194 - 8828135
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcata 242  Q
    ||||||||||||||| | || ||||||||||| ||||||||||||| |||||||||||||    
T  8828194 aagagaaatgatatttgaacaatcatttttgacaattttgtgacaactttctctctcata 8828135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 43755760 - 43755687
Alignment:
Q  174 gttttatggaagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    |||||||  ||||||||||||||| |||| | |||||| |||||||||| |||||||||||||| |||||||||    
T  43755760 gttttatataagagaaatgatatttgtacaaccattttatgataattttttgacaattttctctttcatactca 43755687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 37619542 - 37619606
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || | |||||||||||| ||||||||||| |||||||||||||||||    
T  37619542 aagagaaatgatatttggacaaccatttttgataacttttgtgacaactttctctctcatactca 37619606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 27563483 - 27563546
Alignment:
Q  184 agagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| ||||||||   |||||||| ||||||||||||||||||||||||    
T  27563483 agagaaatgatatttgtacaatcattttgctataattttttgacaattttctctctcatactca 27563546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 34941992 - 34941929
Alignment:
Q  184 agagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| ||||||||||||| ||| ||||||  ||||| |||||||||||||||||    
T  34941992 agagaaatgatatttgtactatcattttgtgacaatttttagacaactttctctctcatactca 34941929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 2362356 - 2362418
Alignment:
Q  185 gagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| |||| |||||||||| |||||||||| ||| |||||||||||||    
T  2362356 gagaaatgatatttgtacaatcactttttgataactttgtgacaactttatctctcatactca 2362418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 15083123 - 15083061
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatact 244  Q
    ||||||||||||||| | || | ||||||||| || |||||||||||||||||||||||||||    
T  15083123 aagagaaatgatatttgaacaaccatttttgacaacttttgtgacaattttctctctcatact 15083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 40118786 - 40118724
Alignment:
Q  185 gagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| |||||||||| ||||||||   ||||||||||||||||||||||    
T  40118786 gagaaatgatatttgtacaatcatttttgtataatttttgtacaattttctctctcatactca 40118724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 48470664 - 48470701
Alignment:
Q  209 ttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  48470664 ttttgataactttgtgacaattttctctctcatactca 48470701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 44672103 - 44672039
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgat-aattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| ||||||||| |  || ||| ||||||||||||||||||||||||    
T  44672103 aagagaaatgatatttgtacaatcattttttaacaactttttgacaattttctctctcatactca 44672039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 5771819 - 5771756
Alignment:
Q  185 gagaaatgatattcgtactatca-tttttgataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||| | || |||| |||||||||||||| ||||||| |||||||||||||||||    
T  5771819 gagaaatgatatttgaacaatcactttttgataatttttgtgacaactttctctctcatactca 5771756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 8845997 - 8846036
Alignment:
Q  208 tttttgataatttt-gtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  8845997 tttttgataatttttgtgacaattttctctctcatactca 8846036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 30535988 - 30536054
Alignment:
Q  182 gaagagaaatgatattcgtactatcatttttgataa--ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||| |||| ||||||||| |  |  ||||||||||| |||||||||||||||||    
T  30535988 gaagagaaatgatatttgtacaatcattttttaacaatttttgtgacaactttctctctcatactca 30536054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 34157519 - 34157581
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| | ||||||| |||||||| | |||| ||| |||||||||||||    
T  34157519 agagaaatgatatttgtacaaccatttttaataattttttaacaactttatctctcatactca 34157581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 246
Target Start/End: Original strand, 37515944 - 37515978
Alignment:
Q  212 tgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||| ||||||||||||||||||||||||    
T  37515944 tgataattttttgacaattttctctctcatactca 37515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 43105105 - 43105167
Alignment:
Q  185 gagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| || ||||||| ||||||||   ||||||||||||||||||||||    
T  43105105 gagaaatgatatttgtacaattatttttgtataatttttatacaattttctctctcatactca 43105167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 4213070 - 4213135
Alignment:
Q  183 aagagaaatgatattcgtactatcattttt-gataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || | ||||||| ||||| ||||||||||| |||||||||||||||||    
T  4213070 aagagaaatgatatttgaacaaccattttttgataacttttgtgacaactttctctctcatactca 4213135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 24136996 - 24136935
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatact 244  Q
    |||| |||||||||| |||  | ||||||| |||||||  ||||||||||||||||||||||    
T  24136996 aagaaaaatgatatttgtataaccatttttaataatttattgacaattttctctctcatact 24136935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 45333569 - 45333630
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatact 244  Q
    |||||||||||||| | || ||||||||| | || ||||||||||| |||||||||||||||    
T  45333569 agagaaatgatatttgaacaatcattttttacaacttttgtgacaactttctctctcatact 45333630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 8350269 - 8350205
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || | ||||||| | || ||||||||||| |||||||||||||||||    
T  8350269 aagagaaatgatatttgaacaaccattttttacaacttttgtgacaactttctctctcatactca 8350205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 27352628 - 27352692
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| |||||| |||  ||||| |||||||||||||||||    
T  27352628 aagagaaatgatatttgtacaaccattttgtgataacttttggacaactttctctctcatactca 27352692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 29489432 - 29489368
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| |||||| ||||  |||| |||||||||||||||||    
T  29489432 aagagaaatgatatttgtacaaccattttgtgataactttggtacaactttctctctcatactca 29489368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 32196668 - 32196700
Alignment:
Q  214 ataattttgtgacaattttctctctcatactca 246  Q
    |||||||| ||||||||||||||||||||||||    
T  32196668 ataattttttgacaattttctctctcatactca 32196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 35369698 - 35369762
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || ||||||||| | || ||||||||||| ||||| |||||||||||    
T  35369698 aagagaaatgatatttgaacaatcattttttacaacttttgtgacaactttctatctcatactca 35369762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 37843505 - 37843441
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |  | ||||||| || |||||||||| |||||||||||||||||    
T  37843505 aagagaaatgatatttgtacaactactttttgacaactttgtgacaactttctctctcatactca 37843441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 47215765 - 47215737
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  47215765 ttttgtgacaattttctctctcatactca 47215737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 49596233 - 49596297
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| | | |||||| |||||| |||||||||||||||||    
T  49596233 aagagaaatgatatttgtacaaccattttattacaattttttgacaactttctctctcatactca 49596297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 50824776 - 50824804
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  50824776 ttttgtgacaattttctctctcatactca 50824804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 51703525 - 51703465
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcata 242  Q
    |||||||||||||||  ||| ||||||| |||||| |||| |||||||||| |||||||||    
T  51703525 aagagaaatgatatttatacaatcatttgtgataacttttttgacaattttatctctcata 51703465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 7678730 - 7678794
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | || ||||||| || ||||||||||||||||||||||||||||    
T  7678730 aagagaaatgatatttgtacaaccactttttgacaactttgtgacaattttctctctcatactca 7678794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 13884231 - 13884169
Alignment:
Q  185 gagaaatgatattcgtactatcattttt-gataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| ||||||||| || || |||||||||| |||||||||||||||||    
T  13884231 gagaaatgatatttgtacaatcattttttgacaactttgtgacaactttctctctcatactca 13884169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 10692437 - 10692501
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || ||||||||| |||| ||||||||||| ||| |||||||||||||    
T  10692437 aagagaaatgatatttgaacaatcattttttataatttttgtgacaactttatctctcatactca 10692501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 24479234 - 24479298
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || | |||||||||||| ||||||||||||||||| | |||||||||    
T  24479234 aagagaaatgatatttgaacaaccatttttgataacttttgtgacaattttctttttcatactca 24479298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 42716318 - 42716382
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | || ||||| |||||||| |||||| |||||||||||||||||    
T  42716318 aagagaaatgatatttgtacaaccactttttcataattttttgacaactttctctctcatactca 42716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 36064029 - 36064092
Alignment:
Q  184 agagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| |||||||| ||| || |||  |||||||||||||||||||||||    
T  36064029 agagaaatgatatttgtacaatcattttgtgacaacttttggacaattttctctctcatactca 36064092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 41406927 - 41406865
Alignment:
Q  185 gagaaatgatattcgtactatcattttt-gataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| ||||||||| || |||||| | |||| |||||||||||||||||    
T  41406927 gagaaatgatatttgtacaatcattttttgacaattttttaacaactttctctctcatactca 41406865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 9549235 - 9549207
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  9549235 ttttgtgacaattttctctctcatactca 9549207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 9738766 - 9738702
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | || ||| | | |||||| ||||||||||||||||||||||||    
T  9738766 aagagaaatgatatttgtacaaccactttctcacaattttttgacaattttctctctcatactca 9738702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 12735048 - 12735020
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  12735048 ttttgtgacaattttctctctcatactca 12735020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 17492530 - 17492590
Alignment:
Q  186 agaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactc 245  Q
    |||||||||||| |||| ||||||| ||| || |||||| |||||||||||| ||||||||    
T  17492530 agaaatgatatttgtacaatcatttgtgacaacttttgtaacaattttctctgtcatactc 17492590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 18651405 - 18651433
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  18651405 ttttgtgacaattttctctctcatactca 18651433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 20065644 - 20065676
Alignment:
Q  212 tgataattttgtgacaattttctctctcatact 244  Q
    |||||||||| ||||||||||||||||||||||    
T  20065644 tgataattttttgacaattttctctctcatact 20065676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 26294187 - 26294251
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| ||| || ||| ||||||||||||||| ||||||||    
T  26294187 aagagaaatgatattggtacaaccattttgtgacaactttttgacaattttctctcacatactca 26294251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 26307444 - 26307508
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| ||| || ||| ||||||||||||||| ||||||||    
T  26307444 aagagaaatgatattggtacaaccattttgtgacaactttttgacaattttctctcacatactca 26307508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 27630895 - 27630959
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| ||||   |||||| ||| |||||| |||||| |||||||||||||||||    
T  27630895 aagagaaatgatatttgtacatccattttatgacaattttttgacaactttctctctcatactca 27630959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 32725853 - 32725789
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | || ||| ||||||||||  ||||||||| |||||||||||||    
T  32725853 aagagaaatgatatttgtacaaccactttgtgataatttttagacaattttttctctcatactca 32725789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 33863321 - 33863257
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||  |||| | |||||| ||||||||||  ||||||||| |||||||||||||    
T  33863321 aagagaaatgatatatgtacaaccattttctgataatttttagacaattttatctctcatactca 33863257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 34473947 - 34474011
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| ||||  ||| ||| ||| ||| || ||||||||||||||||||||||||    
T  34473947 aagagaaatgatatttgtacattcactttgtgacaatcttttgacaattttctctctcatactca 34474011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 35792066 - 35792125
Alignment:
Q  182 gaagagaaatgatattcgtactatcatttttgataa--ttttgtgacaattttctctctc 239  Q
    |||||||||||||||| |||| ||||||||| | ||  ||||||||||| ||||||||||    
T  35792066 gaagagaaatgatatttgtacaatcattttttaaaaacttttgtgacaactttctctctc 35792125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 43715873 - 43715937
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | ||||||  | || ||||||||||| |||||||||||||||||    
T  43715873 aagagaaatgatatttgtacaaccattttctaaaacttttgtgacaactttctctctcatactca 43715937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 44825441 - 44825505
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    |||| |||||||| | | || ||||||||||| || ||||||||||||||| |||||||||||||    
T  44825441 aagaaaaatgataattgaacaatcatttttgacaacttttgtgacaattttatctctcatactca 44825505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 49196694 - 49196758
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| ||| || ||||||||||||||||||||||||||||    
T  49196694 aagagaaatgatatttgtacaaccattttgtgacaactttgtgacaattttctctctcatactca 49196758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 6178496 - 6178434
Alignment:
Q  185 gagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| |  |||||||| || |||||||||||||||||||||||||||||    
T  6178496 gagaaatgatatttgtacaactatttttgacaacttttgtgacaattttctctctcatactca 6178434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 48205045 - 48205107
Alignment:
Q  185 gagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| |||||||||| ||||||||   ||||||||||||||||||||||    
T  48205045 gagaaatgatatttgtacaatcatttttgtataatttttgtacaattttctctctcatactca 48205107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 40419712 - 40419655
Alignment:
Q  186 agaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcata 242  Q
    |||||||||||| |||| |||||||| ||||||||||  |||||||||||||||||||    
T  40419712 agaaatgatatttgtacaatcattttgtgataatttttagacaattttctctctcata 40419655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 42358711 - 42358647
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    |||||||||||||| || || | ||||||||| |||||| ||||||| |||||||||||||||||    
T  42358711 aagagaaatgatatacgaacaaccatttttgacaatttttgtgacaactttctctctcatactca 42358647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 52727521 - 52727457
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |||| ||| |||||||||| |||||| |||||||| ||||||||    
T  52727521 aagagaaatgatatttgtacaatcactttatgataattttttgacaactttctctcacatactca 52727457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 7351710 - 7351647
Alignment:
Q  184 agagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| | |||||||| ||||||||   ||||||||||||||||||||||    
T  7351710 agagaaatgatatttgtacaaccatttttgtataatttttgtacaattttctctctcatactca 7351647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 20548062 - 20547999
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| | || |||| |||| | || |||||||||||||||||||||||||||||    
T  20548062 agagaaatgatatttgaacaatcagtttttacaacttttgtgacaattttctctctcatactca 20547999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 31017465 - 31017403
Alignment:
Q  185 gagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| |||||||| | | || ||| ||||||||||||||||||||||||    
T  31017465 gagaaatgatatttgtacaatcattttctaacaactttttgacaattttctctctcatactca 31017403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 32457826 - 32457764
Alignment:
Q  185 gagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| | || ||||||| || |||||||||| |||||||||||||||||    
T  32457826 gagaaatgatatttgtacaaccactttttgacaactttgtgacaactttctctctcatactca 32457764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 38671618 - 38671680
Alignment:
Q  185 gagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||| | || | ||||||| |||||||| |||||||||||||||||| ||||||    
T  38671618 gagaaatgatatttgaacaaccattttttataatttttgtgacaattttctctctcgtactca 38671680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 41308926 - 41308987
Alignment:
Q  186 agaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||| | || | ||||||| |||| ||||||||||| |||||||||||||||||    
T  41308926 agaaatgatatttgaacaaccattttttataacttttgtgacaactttctctctcatactca 41308987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 41443264 - 41443199
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || |||| ||||||| || |||||||| ||||||||||||||||||||    
T  41443264 aagagaaatgatatttgaacgatcactttttgacaacttttgtgataattttctctctcatactca 41443199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 7287 - 7223
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |||||||| ||| || |||  ||||| |||||||||||||||||    
T  7287 aagagaaatgatatttgtacaatcattttctgacaacttttggacaactttctctctcatactca 7223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 108429 - 108493
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | || ||| ||| |||||| |||||| |||||||||||||||||    
T  108429 aagagaaatgatatttgtacaaccactttgtgacaattttttgacaactttctctctcatactca 108493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 8846526 - 8846554
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  8846526 ttttgtgacaattttctctctcatactca 8846554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 10464978 - 10465006
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  10464978 ttttgtgacaattttctctctcatactca 10465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 16479630 - 16479694
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | ||||||  | || ||||||||||| |||||||||||||||||    
T  16479630 aagagaaatgatatttgtacaaccattttgtacaacttttgtgacaactttctctctcatactca 16479694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 27198233 - 27198169
Alignment:
Q  183 aagagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |||| |||||||||| |||   |||||||| |||||||||||||    
T  27198233 aagagaaatgatatttgtacaatcattttttgataacttttaaacaattttatctctcatactca 27198169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 35376624 - 35376560
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| ||| ||||||  ||||| |||||||||||||||||    
T  35376624 aagagaaatgatatttgtacaaccattttgtgacaatttttagacaactttctctctcatactca 35376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 40367643 - 40367671
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  40367643 ttttgtgacaattttctctctcatactca 40367671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 45711476 - 45711448
Alignment:
Q  218 ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||||||||||||||||||    
T  45711476 ttttgtgacaattttctctctcatactca 45711448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 47849670 - 47849734
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| |||||||||| |||||| |||||||  ||||||||    
T  47849670 aagagaaatgatatttgtacaaccattttgtgataattttttgacaactttctcttacatactca 47849734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 13711060 - 13711123
Alignment:
Q  184 agagaaatgatattcgtactatca-tttttgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| | || |||||||||| |||||||||| |||||||||||||||||    
T  13711060 agagaaatgatatttgtacaaccactttttgataactttgtgacaactttctctctcatactca 13711123  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 12600048 - 12600110
Alignment:
Q  185 gagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| | || ||| ||||||||||||||||| |||||||||||||||||    
T  12600048 gagaaatgatatttgtacaaccactttgtgataattttgtgacaactttctctctcatactca 12600110  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 1573704 - 1573764
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatact 244  Q
    |||||||||||||| |||| ||| ||||||| ||||||  ||||| |||||||||||||||    
T  1573704 agagaaatgatatttgtacaatcttttttgacaatttttagacaactttctctctcatact 1573764  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 8555360 - 8555300
Alignment:
Q  186 agaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||| |||| ||| ||||||| ||||||  ||||| |||||||||||||||||    
T  8555360 agaaatgatatttgtacaatcttttttgacaatttttagacaactttctctctcatactca 8555300  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 41195586 - 41195646
Alignment:
Q  187 gaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||| | |  ||||||||||| || |||||||||||||||||||||||||||||    
T  41195586 gaaatgatatttgaataatcatttttgacaacttttgtgacaattttctctctcatactca 41195646  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 41353570 - 41353506
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| |||| ||| |||||||||| | |||| |||||||||||||||||    
T  41353570 aagagaaatgatatttgtacaatcaatttatgataattttttaacaactttctctctcatactca 41353506  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 5361798 - 5361856
Alignment:
Q  188 aaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||| |||| |||||||| | |||||||| ||||||||||||||||||||||||    
T  5361798 aaatgatatttgtacaatcattttctaataatttt-tgacaattttctctctcatactca 5361856  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 9207589 - 9207652
Alignment:
Q  184 agagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| | || ||||||||| | || ||||||||||| |||||||||||||||||    
T  9207589 agagaaatgatatttgaacaatcattttttacaacttttgtgacaactttctctctcatactca 9207652  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 13553146 - 13553209
Alignment:
Q  184 agagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    |||||||||||||| |||| | || ||| ||||||||||  |||||||||||||||||||||||    
T  13553146 agagaaatgatatttgtacaaccactttgtgataatttttggacaattttctctctcatactca 13553209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 3091741 - 3091803
Alignment:
Q  185 gagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||| |||| |  ||||| |||||| ||| ||||||||||||||||||||||||    
T  3091741 gagaaatgatatttgtacaactattttgtgataactttttgacaattttctctctcatactca 3091803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 22888892 - 22888830
Alignment:
Q  185 gagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    ||||||||||||| | || | ||||||||| |||||| ||||||| |||||||||||||||||    
T  22888892 gagaaatgatatttgaacaaccatttttgacaatttttgtgacaactttctctctcatactca 22888830  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 246
Target Start/End: Original strand, 10711758 - 10711787
Alignment:
Q  217 attttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||||||||||||||||||    
T  10711758 attttgtgacaattttctctctcatactca 10711787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 34945160 - 34945099
Alignment:
Q  186 agaaatgatattcgtactatcatttttgataattttg-tgacaattttctctctcatactca 246  Q
    |||||||||||| | || ||||||||| ||||||||  |||||| |||||||||||||||||    
T  34945160 agaaatgatatttgaacaatcattttttataatttttatgacaactttctctctcatactca 34945099  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 42607568 - 42607539
Alignment:
Q  217 attttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||||||||||||||||||    
T  42607568 attttgtgacaattttctctctcatactca 42607539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 43487376 - 43487441
Alignment:
Q  182 gaagagaaatgatattcgtactatcatttttgataatttt-gtgacaattttctctctcatactca 246  Q
    |||||||||||||||| | || | ||||||| |||||||| ||||||| |||||||||||| ||||    
T  43487376 gaagagaaatgatatttgaacaaccattttttataatttttgtgacaactttctctctcatgctca 43487441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 1889145 - 1889209
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | || ||| ||| |||||| |||||| |||||||||||||||||    
T  1889145 aagagaaatgatatttgtacaaccactttctgacaattttttgacaactttctctctcatactca 1889209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 18846612 - 18846673
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || |||||||||  || |||||||| |||||||||||||| |||||    
T  18846612 aagagaaatgatatttgaacaatcattttt--tacttttgtgataattttctctctcacactca 18846673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 27490803 - 27490739
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || | ||||||||| || ||||||||||| ||||||||||| |||||    
T  27490803 aagagaaatgatatttgaacaaccatttttgacaacttttgtgacaactttctctctcacactca 27490739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 32477330 - 32477382
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttct 234  Q
    ||||||||||||||  | || |||||||||||||| |||||||||||||||||    
T  32477330 aagagaaatgatatatgaacaatcatttttgataacttttgtgacaattttct 32477382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 34139111 - 34139047
Alignment:
Q  183 aagagaaatgatattcgtac-tatcatttttgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |  ||| |||||||||| |||||||||| |||||||||||||    
T  34139111 aagagaaatgatatttgtacatctactttgtgataattttttgacaattttatctctcatactca 34139047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 35171299 - 35171235
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | |||||| ||| |||||||  |||| |||||||||||||||||    
T  35171299 aagagaaatgatatttgtacaaccattttgtgacaattttggtacaactttctctctcatactca 35171235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 36132972 - 36133036
Alignment:
Q  183 aagagaaatgatattcgtactatcatttt-tgataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| | || ||| ||| ||||||||||||| ||| |||||||||||||    
T  36132972 aagagaaatgatatttgtacaaccactttgtgacaattttgtgacaactttatctctcatactca 36133036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 9920 - 9858
Alignment:
Q  184 agagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactc 245  Q
    |||||||||||||| |||| |||||||||  | |||||| |||||||||||||||||||||||    
T  9920 agagaaatgatatttgtacaatcattttttcacaattttttgacaattttctctctcatactc 9858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 18002 - 18064
Alignment:
Q  183 aagagaaatgatattcgtactatcattttt-gataattttgtgacaattttctctctcatact 244  Q
    ||||||||||||||| | || || |||||| || || ||||||||||||||||||||||||||    
T  18002 aagagaaatgatatttggacaattattttttgacaactttgtgacaattttctctctcatact 18064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 2299 - 2235
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttg-ataattttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| |||| ||||||||   |||||||| ||| |||||||||||| |||||||    
T  2299 aagagaaatgatatttgtacaatcattttgctataattttttgataattttctctcttatactca 2235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 49293 - 49357
Alignment:
Q  183 aagagaaatgatattcgtactatcatttttgataa-ttttgtgacaattttctctctcatactca 246  Q
    ||||||||||||||| | || | ||||||| |||| |||| |||||| |||||||||||||||||    
T  49293 aagagaaatgatatttgaacaaccattttttataacttttatgacaactttctctctcatactca 49357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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