View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_low_48 (Length: 241)

Name: NF5229_low_48
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_low_48
NF5229_low_48
[»] chr4 (7 HSPs)
chr4 (18-241)||(24036683-24036906)
chr4 (18-235)||(16564926-16565143)
chr4 (18-230)||(15618237-15618449)
chr4 (18-77)||(52057350-52057409)
chr4 (30-235)||(22698130-22698335)
chr4 (30-235)||(22982195-22982400)
chr4 (30-235)||(22995782-22995987)
[»] chr3 (3 HSPs)
chr3 (18-241)||(51125852-51126075)
chr3 (18-238)||(16247269-16247483)
chr3 (30-235)||(7011051-7011256)
[»] chr8 (4 HSPs)
chr8 (18-241)||(192778-193001)
chr8 (18-241)||(720382-720605)
chr8 (18-241)||(881489-881712)
chr8 (30-235)||(19647590-19647795)
[»] chr2 (5 HSPs)
chr2 (18-241)||(14036019-14036242)
chr2 (18-241)||(13895392-13895615)
chr2 (18-235)||(36310980-36311197)
chr2 (18-235)||(5917428-5917645)
chr2 (30-235)||(23361457-23361662)
[»] chr5 (4 HSPs)
chr5 (18-241)||(33231849-33232072)
chr5 (18-235)||(22480898-22481115)
chr5 (83-238)||(16841231-16841386)
chr5 (30-235)||(22809396-22809601)
[»] chr1 (4 HSPs)
chr1 (18-241)||(46406880-46407103)
chr1 (18-235)||(35570390-35570607)
chr1 (26-235)||(4345386-4345595)
chr1 (18-64)||(35605895-35605941)
[»] scaffold0394 (1 HSPs)
scaffold0394 (18-235)||(9217-9434)
[»] chr6 (2 HSPs)
chr6 (18-235)||(16546839-16547056)
chr6 (18-235)||(17831244-17831461)
[»] chr7 (1 HSPs)
chr7 (18-235)||(37638090-37638307)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 24036683 - 24036906
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24036683 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 24036782  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24036783 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 24036882  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
24036883 ttgaatcattctattacctacccc 24036906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 16565143 - 16564926
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||| ||||||| |||||| |||||||||||||    
16565143 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaataacattgatcatttttaattttggcatgacattcacgaaacatag 16565044  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  ||||||||||||    ||||||| ||  ||| ||||||||||||||||||||||||||| |||||||| |||||    
16565043 gatcttcgggtttaatatatttgaaggacaacttaaggcatgcatgaagtacacgataaaaatgtctacttacagtctcacccgaatgttgaaatctttc 16564944  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
16564943 ttgaatcattctattacc 16564926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 15618449 - 15618237
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||||||| ||||    
15618449 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaataacgttgatcattttttattttggcatgacaatcacgaaatatag 15618350  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  || |||| ||||    ||||||| ||  |||| |||||| ||||||||||||||||||| |||||||| |||||    
15618349 gatcttcgggtttaatatatttgaaggataactcaaggcatgcatgaagtacacgatggaaatgtgtacttacagtctcacccgaatgttgaaatctttc 15618250  T
218 ttgaatcattcta 230  Q
    |||||||||||||    
15618249 ttgaatcattcta 15618237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 52057350 - 52057409
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgt 77  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
52057350 catgacacatgtgtaccatcaattgctcctatagcatttttaaaaaagggccagtatcgt 52057409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 22698335 - 22698130
Alignment:
30 gtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacataggatcttcgggtt 129  Q
    |||||||| ||||||||||| |||||||||||| |||| ||||| ||||||||| |||  ||||| | ||||| |||||| |||| ||||||||  || |    
22698335 gtaccatcgattgctcctatggcattcttaaaatatggtcaataccgtggatcactttgaatttttgcatgactatcacggaacaaaggatcttgaggct 22698236  T
130 taatatatttcatagac-aacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattc 228  Q
    | |||||||  || ||| |||| ||| | | ||   | ||| | ||||||| ||||||| ||||| || ||  ||||||| |||||||||||||||||||    
22698235 ttatatattcgatggacaaactcaagcaag-caactaacacatcatgaaaacgtctactcacagtttctcctaagtgttggaacctttcttgaatcattc 22698137  T
229 tattacc 235  Q
    |||||||    
22698136 tattacc 22698130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 22982195 - 22982400
Alignment:
30 gtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacataggatcttcgggtt 129  Q
    |||||||| ||||||||||| |||||||||||| |||| ||||| ||||||||| |||  ||||| | ||||| |||||| |||| ||||||||  || |    
22982195 gtaccatcgattgctcctatggcattcttaaaatatggtcaataccgtggatcactttgaatttttgcatgactatcacggaacaaaggatcttgaggct 22982294  T
130 taatatatttcatagac-aacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattc 228  Q
    | |||||||  || ||| |||| ||| | | ||   | ||| | ||||||| ||||||| ||||| || ||  ||||||| |||||||||||||||||||    
22982295 ttatatattcgatggacaaactcaagcaag-caactaacacatcatgaaaacgtctactcacagtttctcctaagtgttggaacctttcttgaatcattc 22982393  T
229 tattacc 235  Q
    |||||||    
22982394 tattacc 22982400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 22995782 - 22995987
Alignment:
30 gtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacataggatcttcgggtt 129  Q
    |||||||| ||||||||||| |||||||||||| |||| ||||| ||||||||| |||  ||||| | ||||| |||||| |||| ||||||||  || |    
22995782 gtaccatcgattgctcctatggcattcttaaaatatggtcaataccgtggatcactttgaatttttgcatgactatcacggaacaaaggatcttgaggct 22995881  T
130 taatatatttcatagac-aacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattc 228  Q
    | |||||||  || ||| |||| ||| | | ||   | ||| | ||||||| ||||||| ||||| || ||  ||||||| |||||||||||||||||||    
22995882 ttatatattcgatggacaaactcaagcaag-caactaacacatcatgaaaacgtctactcacagtttctcctaagtgttggaacctttcttgaatcattc 22995980  T
229 tattacc 235  Q
    |||||||    
22995981 tattacc 22995987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 51125852 - 51126075
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51125852 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 51125951  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51125952 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 51126051  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
51126052 ttgaatcattctattacctacccc 51126075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 16247269 - 16247483
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    |||||||||||||||   | ||||||| ||||||||||   |||| | |||||||| ||| |||||||||||||||||| ||||||||||| ||||||||    
16247269 catgacacatgtgta---taaattgcttctatagcatta--aaaataaggccaataacgtcgatcattttttattttggcatgacaatcacaaaacatag 16247363  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    ||||||| |||||||||||||| |  ||||||||||||    ||||||| ||  |||||||||||||||||| ||||| |||||| ||||||||  ||||    
16247364 gatcttcaggtttaatatatttgaaggacaacttaaggcatgcatgaagtac-cgatgaaaatgtctacttatagtctaacccgaatgttgaaatatttc 16247462  T
218 ttgaatcattctattacctac 238  Q
    |||||| ||||||||||||||    
16247463 ttgaattattctattacctac 16247483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 7011256 - 7011051
Alignment:
30 gtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacataggatcttcgggtt 129  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||  ||||| | ||||| |||||| |||| ||||||||  || |    
7011256 gtaccatcgattgctcctatggcattcttaaaaaatggccaatatcgtggatcactttgaatttttgcatgactatcacggaacaaaggatcttgaggct 7011157  T
130 taatatatttcatagac-aacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattc 228  Q
    | |||||||  || ||| |||| ||| | | ||   | ||| | ||||||| ||||||| ||||| || || |||||||| ||||||||||||||||||     
7011156 ttatatattcgatggacaaactcaagcaag-caactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattt 7011058  T
229 tattacc 235  Q
    |||||||    
7011057 tattacc 7011051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 193001 - 192778
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
193001 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaactggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 192902  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
192901 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 192802  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
192801 ttgaatcattctattacctacccc 192778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 720605 - 720382
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
720605 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaactggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 720506  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
720505 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 720406  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
720405 ttgaatcattctattacctacccc 720382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 881712 - 881489
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
881712 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaactggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 881613  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
881612 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 881513  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
881512 ttgaatcattctattacctacccc 881489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 19647795 - 19647590
Alignment:
30 gtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacataggatcttcgggtt 129  Q
    |||||||| ||||||||||| |||||||||||||||||||||||  |||||||| |||  ||||| | ||||| |||||| |||| ||||||||  || |    
19647795 gtaccatcgattgctcctatggcattcttaaaaaatggccaatactgtggatcactttgaatttttgcatgactatcacggaacaaaggatcttgaggct 19647696  T
130 taatatatttcatagac-aacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattc 228  Q
    | |||||||  || ||| |||| ||| | | ||   | ||| | ||||||| ||||||| ||||| || || |||||||| |||||||||||||||||||    
19647695 ttatatattcgatggacaaactcaagcaag-caactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattc 19647597  T
229 tattacc 235  Q
    |||||||    
19647596 tattacc 19647590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 14036242 - 14036019
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||| ||||| |||    
14036242 catgacacatgtgtaccatcaattgctcctatatcattcttaaaaaagggctagtatcgttgatcattttttattttggaatgacaatcatgaaacgtag 14036143  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14036142 gatcttcgggtttaatatatttgatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 14036043  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
14036042 ttgaatcattctattacctacccc 14036019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 13895615 - 13895392
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||| ||||| |||    
13895615 catgacacatgtgtaccatcaattgctcctataacattcttaaaaaagggctagtatcgttgatcattttttattttggaatgacaatcatgaaacgtag 13895516  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||    
13895515 gatcttcgggtttaatatatttgatagacaacttaaggacgacatgaagtactcgatgaaaatatctactaacagtctcacccgagtgttgaaacctttc 13895416  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
13895415 ttgaatcattctattacctacccc 13895392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 36311197 - 36310980
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||||| |||||| |||| ||||||||    
36311197 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaataacgttgatcatttttaattttggcatgacattcacaaaacatag 36311098  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  ||||||||||||    ||||||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||    
36311097 gatcttcgggtttaatatatttgaaggacaacttaaggcatgcatgaagtacacgatgaaaatgtctacttacagtctcacccgaatgttgaaatctttc 36310998  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
36310997 ttgaatcattctattacc 36310980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 5917428 - 5917645
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||||| ||||||| |||||| |||| ||||||||    
5917428 catgacacatgtgtaccatcaattactcctatagcattcttaaaaaaaggccaataacgttgatcatttttaattttggcatgacattcacaaaacatag 5917527  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  ||||||||||||    ||||||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||    
5917528 gatcttcgggtttaatatatttgaaggacaacttaaggcatgcatgaagtacacgatgaaaatgtctacttacagtctcacccgaatgttgaaatctttc 5917627  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
5917628 ttgaatcattctattacc 5917645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 23361457 - 23361662
Alignment:
30 gtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacataggatcttcgggtt 129  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||  ||||| | ||||| |||||| |||| ||||||||  || |    
23361457 gtaccatcgattgctcctatggcattcttaaaaaatggccaataccgtggatcactttgaatttttgcatgactatcacggaacaaaggatcttaaggct 23361556  T
130 taatatatttcatagac-aacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattc 228  Q
    | |||||||  || ||| |||| ||| | || |  || ||| | ||||||| ||||||| ||||| || || |||||||| |||||||||||||||||||    
23361557 ttatatattcgatggacaaactcaagaaagaaactaa-cacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattc 23361655  T
229 tattacc 235  Q
    |||||||    
23361656 tattacc 23361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 33232072 - 33231849
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||| |||    
33232072 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaagggccagtatcgttgatcattttttattttggaatgacaatcatgaaacgtag 33231973  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||    
33231972 gatcttcgggtttaatatatttgatagacaacttaaggacgacatgaagtactcgatgaaaatatctactaacagtctcacccgagtgttgaaacctttc 33231873  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
33231872 ttgaatcattctattacctacccc 33231849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 22481115 - 22480898
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||||| |||||| |||| ||||||||    
22481115 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaataacgttgatcatttttaattttggcatgacattcacaaaacatag 22481016  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  ||||||||||||    ||||||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||    
22481015 gatcttcgggtttaatatatttgaaggacaacttaaggcatgcatgaagtacacgatgaaaatgtctacttacagtctcacccgaatgttgaaatctttc 22480916  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
22480915 ttgaatcattctattacc 22480898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 16841386 - 16841231
Alignment:
83 attttttattttggaatgacaatcacgaaacataggatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgt 182  Q
    |||||||||||||| ||||||||||||||||||| ||||||  |||||||||||||| |  || ||||||||     || |||  ||   ||| |||||     
16841386 attttttattttggcatgacaatcacgaaacatatgatctttaggtttaatatatttgaaggataacttaagacatgcaagaaatacactatggaaatga 16841287  T
183 ctacttacagtctcacccgagtgttgaaacctttcttgaatcattctattacctac 238  Q
    |||||||||||||||| | |||||||||| |||| |||||||||||||||||||||    
16841286 ctacttacagtctcactcaagtgttgaaatctttattgaatcattctattacctac 16841231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 22809601 - 22809396
Alignment:
30 gtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacataggatcttcgggtt 129  Q
    |||||||| |||||||||||  |||||||||||||||||||||| ||||||||| |||  ||||| | ||||| |||||| |||| ||||||||  || |    
22809601 gtaccatcgattgctcctatgacattcttaaaaaatggccaataccgtggatcactttgaatttttgcatgactatcacggaacaaaggatcttgaggct 22809502  T
130 taatatatttcatagac-aacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattc 228  Q
    | |||||||  || ||| |||| ||| | | ||   | ||| | ||||||| ||||||| ||||| || || |||||||| |||||||||||||||||||    
22809501 ttatatattctatggacaaactcaagcaag-caactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattc 22809403  T
229 tattacc 235  Q
    |||||||    
22809402 tattacc 22809396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 46407103 - 46406880
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||| ||||| |||    
46407103 catgacacatgtgtaccatcaattgctcctatatcattcttaaaaaagggctagtatcgttgatcattttttattttggaatgacaatcatgaaacgtag 46407004  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||  |||||| |||||||||| ||||||||||||||||||    
46407003 gatcttcgggtttaatatatttgatagacaacttaaggacgacatgaagtactcgatgaaaacatctactaacagtctcactcgagtgttgaaacctttc 46406904  T
218 ttgaatcattctattacctacccc 241  Q
    ||||||||||||||||||||||||    
46406903 ttgaatcattctattacctacccc 46406880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 35570390 - 35570607
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||||| |||||| |||| ||||||||    
35570390 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaataacgttgatcatttttaattttggcatgacattcacaaaacatag 35570489  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  ||||||||||||    ||||||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||    
35570490 gatcttcgggtttaatatatttgaaggacaacttaaggcatgcatgaagtacacgatgaaaatgtctacttacagtctcacccgaatgttgaaatctttc 35570589  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
35570590 ttgaatcattctattacc 35570607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 4345595 - 4345386
Alignment:
26 atgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacataggatcttcg 125  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||  ||||| | ||||| |||||| |||| ||||||||      
4345595 atgtgtaccatcgattgctcctatggcattcttaaaaaatggccaataccgtggatcactttgaatttttgcatgactatcacggaacaaaggatcttga 4345496  T
126 ggtttaatatatttcatagac-aacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatc 224  Q
    || || |||||||  || ||| |||| ||| | | ||   | ||| | ||||||| ||||||| ||||| || || |||||||| |||||||||||||||    
4345495 ggctttatatattcgatggacaaactcaagcaag-caactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatc 4345397  T
225 attctattacc 235  Q
    |||||||||||    
4345396 attctattacc 4345386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 35605941 - 35605895
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaa 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
35605941 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaa 35605895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 9217 - 9434
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
9217 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaataacgttgatcattttttattttggcatgacaatcacgaaacatag 9316  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||| ||||||||||||||| |  ||||||||||||    ||||||| ||  |||| |||||||||||||||||||||||| | |||||||| |||||    
9317 gatctttgggtttaatatatttgaaggacaacttaaggcatgcatgaagtacacgatggaaatgtctacttacagtctcacccaaatgttgaaatctttc 9416  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
9417 ttgaatcattctattacc 9434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 16547056 - 16546839
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||||| |||||| |||| ||||||||    
16547056 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaataacgttgatcatttttaattttggcatgacattcacaaaacatag 16546957  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  ||||||||||||    ||||||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||    
16546956 gatcttcgggtttaatatatttgaaggacaacttaaggcatgcatgaagtacacgatgaaaatgtctacttacagtctcacccgaatgttgaaatctttc 16546857  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
16546856 ttgaatcattctattacc 16546839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 17831244 - 17831461
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||| |||||||||||||||    
17831244 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaaaggccaataacgttgatcattttttattttggcatgaaaatcacgaaacatag 17831343  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  ||||||||||||    ||||||| ||  |||| |||||||||||||||||||||||| | |||||||| |||||    
17831344 gatcttcgggtttaatatatttgaaggacaacttaaggcatgcatgaagtacacgatgtaaatgtctacttacagtctcaccctaatgttgaaatctttc 17831443  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
17831444 ttgaatcattctattacc 17831461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 37638307 - 37638090
Alignment:
18 catgacacatgtgtaccatcaattgctcctatagcattcttaaaaaatggccaatatcgtggatcattttttattttggaatgacaatcacgaaacatag 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||  |||||| |||||||||||||    
37638307 catgacacatgtgtaacatcaattgctcctatagcattcttaaaagaaggccaataacgttgatcattttttattttgacatgacattcacgaaacatag 37638208  T
118 gatcttcgggtttaatatatttcatagacaacttaaggacgacatgaagcacttgatgaaaatgtctacttacagtctcacccgagtgttgaaacctttc 217  Q
    |||||||||||||||||||||| |  ||||| ||||||    ||||||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||    
37638207 gatcttcgggtttaatatatttgaaggacaatttaaggcatgcatgaagtacacgatgaaaatgtctacttacagtctcacccgaatgttgaaatctttc 37638108  T
218 ttgaatcattctattacc 235  Q
    ||||||||||||||||||    
37638107 ttgaatcattctattacc 37638090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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