View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_52 (Length: 239)
Name: NF5229_low_52
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 44561168 - 44561348
Alignment:
| Q |
1 |
caaattatttcaagtttgcatgattcataaaatgcaaattgaaaataaaattccatgattgtaaatgaattaaagcatgaagatgaaacgattgctagat |
100 |
Q |
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| T |
44561168 |
caaattatttcaagtttgcatgattcataaaatgcaaattgaaaataaaattccatgattgtaaatgaattaaagcatgaagatgaaacgattgctagat |
44561267 |
T |
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| Q |
101 |
caaagtaaggttttaagttttcaaattaacagttagttaattaaaatcacgatccacgcatttgtatctctggagtctgtg |
181 |
Q |
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| T |
44561268 |
caaagtaaggttttaagttttcaaattaacagttagttaattaaaatcacgatcctcgcatctgtatctctcgagtgtgtg |
44561348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 44560889 - 44560846
Alignment:
| Q |
179 |
gtgttttgataagtattaaaagctcaaaaagatgcatcaacttaa |
223 |
Q |
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| T |
44560889 |
gtgttttgataagtattaaaagctc-aaaagatgcatcaacttaa |
44560846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 24459625 - 24459576
Alignment:
| Q |
2 |
aaattatttcaagtttgcatgattcataaaatgcaaattgaaaataaaat |
51 |
Q |
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|||| ||||||||||| |||||||||| ||||||||||||||||| |||| |
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| T |
24459625 |
aaatcatttcaagttttcatgattcatgaaatgcaaattgaaaatcaaat |
24459576 |
T |
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