View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_54 (Length: 239)
Name: NF5229_low_54
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 2326819 - 2326660
Alignment:
| Q |
17 |
actccaactccaaaagtgtatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
2326819 |
actccaactccaaaagtgtatccacgtaggaaacaacagtattagcattgttcaatttagtctccttaacttgcttcctccctcttatcagcggaagcaa |
2326720 |
T |
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| Q |
117 |
aacatcttcttgatctctacgcaacatcaacaattcctcccattttttacgcaacaaaat |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2326719 |
aacatcttcttgatctctacgcaacatcaacaattcctcccattgtttacgcaacaaaat |
2326660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 2330534 - 2330375
Alignment:
| Q |
17 |
actccaactccaaaagtgtatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaa |
116 |
Q |
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|||||||||||| ||| ||||| || || ||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
2330534 |
actccaactccataagagtatctacatacgaaacaacagtattaatattgttcaatctactctccttaacatgcttcctcgctcttatcagcggaagcag |
2330435 |
T |
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| Q |
117 |
aacatcttcttgatctctacgcaacatcaacaattcctcccattttttacgcaacaaaat |
176 |
Q |
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|||||||||||||||| || ||||| || ||| || |||||| ||||||||||||||| |
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| T |
2330434 |
aacatcttcttgatctttaagcaacttcgccaactcatcccatcgtttacgcaacaaaat |
2330375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 2309982 - 2309823
Alignment:
| Q |
17 |
actccaactccaaaagtgtatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaa |
116 |
Q |
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|||| ||||| ||||| ||||| | || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
2309982 |
actctaactctaaaagagtatctgcatatgaaacaacagtattaacattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcag |
2309883 |
T |
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| Q |
117 |
aacatcttcttgatctctacgcaacatcaacaattcctcccattttttacgcaacaaaat |
176 |
Q |
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|||||| |||||||| || | ||| |||| || |||||||||| |||||| ||||||| |
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| T |
2309882 |
aacatcctcttgatccttaagtaacttcaaaaactcctcccattggttacgcgacaaaat |
2309823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 2320965 - 2320806
Alignment:
| Q |
17 |
actccaactccaaaagtgtatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaa |
116 |
Q |
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|
|||||||||| ||||| ||||| | || |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
2320965 |
actccaactctaaaagagtatctgcatacgaaacaactgtattatcattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcag |
2320866 |
T |
|
| Q |
117 |
aacatcttcttgatctctacgcaacatcaacaattcctcccattttttacgcaacaaaat |
176 |
Q |
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|||||| |||||||| || | ||| |||| || ||||||||| |||||||||||||| |
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| T |
2320865 |
aacatcctcttgatccttaagtaacttcaaaaactcctcccatcggttacgcaacaaaat |
2320806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 2293622 - 2293492
Alignment:
| Q |
46 |
gaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatca |
145 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||| || | ||| ||| |
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| T |
2293622 |
gaaacaacagtattaatattgttcaatttactctccttaacttgcttccttgctcttatcagcggaagcagaacatcctcttgatccttaagtaacttca |
2293523 |
T |
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| Q |
146 |
acaattcctcccattttttacgcaacaaaat |
176 |
Q |
| |
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| || |||||||||| |||||||||||||| |
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| T |
2293522 |
aaaactcctcccattggttacgcaacaaaat |
2293492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 2350840 - 2350726
Alignment:
| Q |
17 |
actccaactccaaaagtgtatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaa |
116 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| |||| ||| ||||||||||| ||||||| ||||||||||||||| |||| |||||| ||||||| |
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| T |
2350840 |
actccaactccaaaagagtatccacatacgaaactacagggttaacattgttcaatctactctctttaacttgcttcctcgctctaatcagcggaagcaa |
2350741 |
T |
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| Q |
117 |
aacatcttcttgatc |
131 |
Q |
| |
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||||||||||||||| |
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| T |
2350740 |
aacatcttcttgatc |
2350726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 2303264 - 2303105
Alignment:
| Q |
17 |
actccaactccaaaagtgtatccacgtaggaaacaacagtattagcattgttcaatttactctccttaacttgcttcctccctcttatcagctgaagcaa |
116 |
Q |
| |
|
|||||||||| | ||| ||||| | || ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||| | |
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| T |
2303264 |
actccaactctagaagagtatctgcatacgaaacaacagtattaacattgttcaatttactctccttaacttgtttcctcgctcttatcagcggaagtag |
2303165 |
T |
|
| Q |
117 |
aacatcttcttgatctctacgcaacatcaacaattcctcccattttttacgcaacaaaat |
176 |
Q |
| |
|
|||||| |||||||| || | ||| |||| || |||| |||| |||||||||||||| |
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| T |
2303164 |
aacatcctcttgatccttaagtaacttcaaaaactccttccatcggttacgcaacaaaat |
2303105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 2326548 - 2326492
Alignment:
| Q |
183 |
aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataactgt |
239 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2326548 |
aaaacacataaaaacaagtaaacagaacatagcataatgaaagtgtggaataactgt |
2326492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 2350569 - 2350515
Alignment:
| Q |
183 |
aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataact |
237 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| | |||||||| |||||| |
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|
| T |
2350569 |
aaaacacatgaaaacaagtaaacagaacatagcatagttgaagtgtggcataact |
2350515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 2293380 - 2293327
Alignment:
| Q |
183 |
aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataac |
236 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| | |||||||| ||||| |
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|
| T |
2293380 |
aaaacacataaaaacaagtaaagagaacatagcatatttgaagtgtggcataac |
2293327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 2309711 - 2309658
Alignment:
| Q |
183 |
aaaacacataaaaacaagcaaacagaacatagcataatgaaagtgtggaataac |
236 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| | |||||||| ||||| |
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| T |
2309711 |
aaaacacataaaaacaagtaaagagaacatagcatatttgaagtgtggcataac |
2309658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 41126773 - 41126687
Alignment:
| Q |
90 |
cttcctccctcttatcagctgaagcaaaacatcttcttgatctctacgcaacatcaacaattcctcccattttttacgcaacaaaat |
176 |
Q |
| |
|
||||||| ||||||| ||| |||| | |||||||||||||||| | |||||| ||||||||||||||||| |||||| || ||||| |
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| T |
41126773 |
cttcctcgctcttattagcggaagtagaacatcttcttgatcttttcgcaacttcaacaattcctcccatcgtttacggaataaaat |
41126687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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