View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_low_57 (Length: 238)

Name: NF5229_low_57
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_low_57
NF5229_low_57
[»] chr4 (4 HSPs)
chr4 (18-238)||(7010400-7010621)
chr4 (89-160)||(35255496-35255568)
chr4 (89-124)||(20217486-20217521)
chr4 (84-123)||(46216980-46217019)
[»] chr6 (5 HSPs)
chr6 (89-153)||(10067754-10067819)
chr6 (90-160)||(13382467-13382538)
chr6 (89-153)||(19264755-19264819)
chr6 (89-125)||(9436773-9436809)
chr6 (89-125)||(515764-515800)
[»] chr2 (7 HSPs)
chr2 (89-153)||(6788519-6788584)
chr2 (89-160)||(15301619-15301691)
chr2 (92-146)||(11563344-11563399)
chr2 (89-142)||(1902438-1902492)
chr2 (18-63)||(12676490-12676534)
chr2 (89-125)||(34883935-34883971)
chr2 (89-140)||(35150369-35150421)
[»] chr7 (5 HSPs)
chr7 (89-160)||(8062903-8062975)
chr7 (89-167)||(32996231-32996310)
chr7 (89-124)||(39608353-39608388)
chr7 (89-140)||(29196774-29196826)
chr7 (89-160)||(38838679-38838751)
[»] chr3 (1 HSPs)
chr3 (86-160)||(23152310-23152384)
[»] scaffold0003 (1 HSPs)
scaffold0003 (89-123)||(328804-328838)
[»] chr1 (4 HSPs)
chr1 (90-147)||(19464229-19464287)
chr1 (91-160)||(33747270-33747340)
chr1 (84-140)||(2998900-2998957)
chr1 (89-125)||(10018740-10018776)
[»] chr8 (4 HSPs)
chr8 (89-126)||(23665032-23665069)
chr8 (89-161)||(35355254-35355327)
chr8 (89-140)||(17488226-17488278)
chr8 (89-140)||(28802304-28802356)
[»] chr5 (3 HSPs)
chr5 (90-146)||(22391708-22391765)
chr5 (89-125)||(917191-917227)
chr5 (89-160)||(11534999-11535071)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 7010400 - 7010621
Alignment:
Q  18 tgagggactaatatgacattattaacaaaacatttttaacgtcagagacaaattggaccaaagtagtgaagtattttaaaatttc-gatacattgagaga 116  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  7010400 tgagagactaatatgacattattaacaaaacatttctaacgtcagagacaaattggaccaacgtagtgaagtattttaaaatttctgatacattgagaga 7010499  T
Q  117 ctattgtgatatttgttacacatttaaggacgaaaataattattcacccgaaaaaggttttaccaatgtatacaatcatattccatcatctttatgttga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7010500 ctattgtgatatttgttacacatttaaggacgaaaataattattcacctgaaaaaggttttaccaatgtatacaatcatattccatcatcattatgttga 7010599  T
Q  217 tttttgtttattatagtgattc 238  Q
    ||||||||||||||||| ||||    
T  7010600 tttttgtttattatagtaattc 7010621  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 35255496 - 35255568
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaataattatt 160  Q
    |||||||||||||  |||||||||||||||||||||| || | |||||| ||||| |||| ||||||| ||||    
T  35255496 tattttaaaattttaatacattgagagactattgtgactactcgttacatatttagggaccaaaataactatt 35255568  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 20217486 - 20217521
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtg 124  Q
    ||||||||||||| ||||||||||||||||||||||    
T  20217486 tattttaaaattttgatacattgagagactattgtg 20217521  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 46217019 - 46216980
Alignment:
Q  84 tgaagtattttaaaatttcgatacattgagagactattgt 123  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  46217019 tgaactattttaaaattttgatacattgagagactattgt 46216980  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 10067754 - 10067819
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgt-gatatttgttacacatttaaggacgaaaat 153  Q
    ||||||||||||||||||||||||||||||||||| | || |||||||||||| || ||| |||||    
T  10067754 tattttaaaatttcgatacattgagagactattgtggttacttgttacacattcaaagactaaaat 10067819  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 13382467 - 13382538
Alignment:
Q  90 attttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaataattatt 160  Q
    |||||||||||| |||||||||| ||||||||  || ||||||||| |||||||||||| ||||| ||||||    
T  13382467 attttaaaattttgatacattgacagactattacgactatttgttatacatttaaggactaaaatgattatt 13382538  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 19264755 - 19264819
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaat 153  Q
    |||||||||||||||||||||| |||||||||||||| || | |||||||||| ||||||| ||||    
T  19264755 tattttaaaatttcgatacatt-agagactattgtgactactcgttacacattcaaggacgtaaat 19264819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 9436773 - 9436809
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga 125  Q
    ||||||||||||||||| |||||||||||||||||||    
T  9436773 tattttaaaatttcgatccattgagagactattgtga 9436809  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 515800 - 515764
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga 125  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  515800 tattttaaaattttgatacattgagatactattgtga 515764  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 6788519 - 6788584
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaat 153  Q
    ||||||||||||| ||||||||||  ||||||| ||| ||||||||||||||||||||| ||||||    
T  6788519 tattttaaaattttgatacattgaatgactattatgactatttgttacacatttaaggatgaaaat 6788584  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 15301619 - 15301691
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaataattatt 160  Q
    |||||| |||||||||||||||||||||| ||||||| || | ||||||||||||||||  ||||||| ||||    
T  15301619 tattttgaaatttcgatacattgagagacgattgtgattagtcgttacacatttaaggatcaaaataactatt 15301691  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 11563399 - 11563344
Alignment:
Q  92 tttaaaatttcgatacattgagagactattgt-gatatttgttacacatttaagga 146  Q
    |||||||||||||||||||||| | ||||||| | |||||||||||||||||||||    
T  11563399 tttaaaatttcgatacattgaggggctattgtagttatttgttacacatttaagga 11563344  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 1902438 - 1902492
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacattta 142  Q
    ||||||||||||| ||||||||| || |||||||||| ||||| |||||||||||    
T  1902438 tattttaaaatttagatacattgtgaaactattgtgactatttcttacacattta 1902492  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 12676534 - 12676490
Alignment:
Q  18 tgagggactaatatgacattattaacaaaacatttttaacgtcaga 63  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||    
T  12676534 tgagggactaatatgacaatattaataaaaca-ttttaacgtcaga 12676490  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 34883971 - 34883935
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga 125  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  34883971 tattttaaaattttgatacattgagggactattgtga 34883935  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 35150421 - 35150369
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgt-gatatttgttacacatt 140  Q
    ||||||||||||| ||| ||||||||||||||||| | || ||||||||||||    
T  35150421 tattttaaaattttgatgcattgagagactattgtagctacttgttacacatt 35150369  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 8062903 - 8062975
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaataattatt 160  Q
    |||||||||||||  ||||||||| |||||||||||| || | |||||||||| |||||| ||||||| ||||    
T  8062903 tattttaaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactatt 8062975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 32996310 - 32996231
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaataattattcacccga 167  Q
    |||||| |||||||||||||||||  ||  ||| | | ||||| |||||||||||||||| |||||||||||| ||||||    
T  32996310 tatttttaaatttcgatacattgaaggatcattataactatttattacacatttaaggaccaaaataattattaacccga 32996231  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 39608388 - 39608353
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtg 124  Q
    |||||| |||||||||||||||||||||||||||||    
T  39608388 tattttgaaatttcgatacattgagagactattgtg 39608353  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 29196826 - 29196774
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatt 140  Q
    ||||||||||||| |||||||||| | |||||||||| |||| ||||||||||    
T  29196826 tattttaaaattttgatacattgaaaaactattgtgactattcgttacacatt 29196774  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 38838679 - 38838751
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaataattatt 160  Q
    |||||||||||||  ||||||||| ||| |||||||| || | |||||||||| | |||| ||||||||||||    
T  38838679 tattttaaaattttaatacattgatagaatattgtgactactcgttacacattcagggaccaaaataattatt 38838751  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 23152310 - 23152384
Alignment:
Q  86 aagtattttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaataattatt 160  Q
    ||||||||| |||||| ||||| ||||||||||||| ||  ||||||||||||||||| |||| ||||| ||||||    
T  23152310 aagtattttgaaattttgatac-ttgagagactattatgcctatttgttacacatttacggactaaaatgattatt 23152384  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 328838 - 328804
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgt 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  328838 tattttaaaatttcgatacattgaaagactattgt 328804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 19464287 - 19464229
Alignment:
Q  90 attttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggac 147  Q
    ||||| |||||| ||||||||||  ||||||||||| || |||||||||||||||||||    
T  19464287 atttttaaattttgatacattgaaggactattgtgactacttgttacacatttaaggac 19464229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 33747340 - 33747270
Alignment:
Q  91 ttttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaaggacgaaaataattatt 160  Q
    |||| |||||||||||||||||   |||||||||| || |||||||||||| |||| | ||||||||||||    
T  33747340 ttttgaaatttcgatacattgaagaactattgtgactacttgttacacattcaaggtccaaaataattatt 33747270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 2998957 - 2998900
Alignment:
Q  84 tgaagtattttaaaatttcgatacattgagagactattgtga-tatttgttacacatt 140  Q
    |||| ||||||||||||| |||||||| | |||||||||||| || ||||||||||||    
T  2998957 tgaactattttaaaattttgatacatttacagactattgtgattacttgttacacatt 2998900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 10018776 - 10018740
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga 125  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  10018776 tattttaaaattttgatacattgatagactattgtga 10018740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 23665069 - 23665032
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtgat 126  Q
    ||||||||||||||||||||||||| || |||||||||    
T  23665069 tattttaaaatttcgatacattgagggattattgtgat 23665032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 35355327 - 35355254
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtgatat-ttgttacacatttaaggacgaaaataattattc 161  Q
    |||||||||||||| |||||||||||||||||| ||| ||  ||||||||||| ||  || ||||| |||||||    
T  35355327 tattttaaaatttcaatacattgagagactattatgacatgctgttacacattcaaatactaaaatgattattc 35355254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 17488226 - 17488278
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatt 140  Q
    |||||| |||||||| ||||||||| ||||||||||| || ||||||||||||    
T  17488226 tattttgaaatttcgctacattgagggactattgtgactacttgttacacatt 17488278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 28802356 - 28802304
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga-tatttgttacacatt 140  Q
    ||||||||||||| ||||||| ||  ||||||||||| |||||||||||||||    
T  28802356 tattttaaaattttgatacatcgatggactattgtgactatttgttacacatt 28802304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 22391765 - 22391708
Alignment:
Q  90 attttaaaatttcgatacattgagagactattgtga-tatttgttacacatttaagga 146  Q
    |||||||||||| |||| ||||| |||||||| ||| |||| ||||||||||||||||    
T  22391765 attttaaaattttgatatattgaaagactattatgactattcgttacacatttaagga 22391708  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 917191 - 917227
Alignment:
Q  89 tattttaaaatttcgatacattgagagactattgtga 125  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  917191 tattttaaaatttcgatacattgagggacgattgtga 917227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 11534999 - 11535071
Alignment:
Q  89 tattttaaaatttcgatacattgagagacta-ttgtgatatttgttacacatttaaggacgaaaataattatt 160  Q
    ||||||||||||| ||||||||||| ||||| | | | || || ||||||||||| |||| ||||||||||||    
T  11534999 tattttaaaattttgatacattgagggactactagggttacttcttacacatttagggaccaaaataattatt 11535071  T

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