View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5229_low_59 (Length: 234)

Name: NF5229_low_59
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5229_low_59
NF5229_low_59
[»] chr5 (1 HSPs)
chr5 (1-216)||(10343959-10344174)
[»] chr6 (2 HSPs)
chr6 (98-141)||(7337577-7337620)
chr6 (16-64)||(10153227-10153275)
[»] chr4 (6 HSPs)
chr4 (97-143)||(2741913-2741959)
chr4 (100-144)||(10355330-10355374)
chr4 (97-143)||(2741512-2741558)
chr4 (100-137)||(9322343-9322380)
chr4 (100-137)||(9334304-9334341)
chr4 (100-137)||(9376822-9376859)
[»] chr1 (1 HSPs)
chr1 (17-56)||(28016579-28016618)
[»] chr3 (1 HSPs)
chr3 (97-138)||(45495546-45495587)
[»] chr7 (1 HSPs)
chr7 (97-141)||(30021510-30021554)
[»] chr2 (1 HSPs)
chr2 (21-49)||(13292794-13292822)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10344174 - 10343959
Alignment:
Q  1 ttagtataatttgtcagtacaattattttacacattcattcaatgatgtgctgtcaagtcaattgaatgcatgtgtaaatttcttgtatttaagcaatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10344174 ttagtataatttgtcagtacaattattttacacattcattcaatgatgtgccgtcaagtcaattgaatgcatgtgtaaatttcttgtatttaagcaatgt 10344075  T
Q  101 gtaaaataattgtacacccacaaaatatactaattaaactcttgcatctaatgcagattggtgttcattcaagaacaaaaaagcataccagggagtaatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10344074 gtaaaataattgtacacccacaaaatatactaattaaactcttgcatctaatgcagattggtgttcattcaagaacaaaaaagcataccagggagtaacg 10343975  T
Q  201 tatccaagcacgggat 216  Q
    ||||||||||||||||    
T  10343974 tatccaagcacgggat 10343959  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 7337620 - 7337577
Alignment:
Q  98 tgtgtaaaataattgtacacccacaaaatatactaattaaactc 141  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  7337620 tgtgtaaaataattgtacactcacaaaatatactaattaaactc 7337577  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 10153275 - 10153227
Alignment:
Q  16 agtacaattattttacacattcattcaatgatgtgctgtcaagtcaatt 64  Q
    |||||||||||||||||||| |||||||| ||||| ||||| |||||||    
T  10153275 agtacaattattttacacatgcattcaataatgtgttgtcacgtcaatt 10153227  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 2741959 - 2741913
Alignment:
Q  97 atgtgtaaaataattgtacacccacaaaatatactaattaaactctt 143  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  2741959 atgtgtaaaataattgtacaccgacaaaatatactaattaaattctt 2741913  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 10355330 - 10355374
Alignment:
Q  100 tgtaaaataattgtacacccacaaaatatactaattaaactcttg 144  Q
    |||||||||||| |||||| |||||| ||||||||||||||||||    
T  10355330 tgtaaaataattatacaccgacaaaacatactaattaaactcttg 10355374  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 2741558 - 2741512
Alignment:
Q  97 atgtgtaaaataattgtacacccacaaaatatactaattaaactctt 143  Q
    |||||||||||||||||||||  |||||||||| |||||||| ||||    
T  2741558 atgtgtaaaataattgtacactgacaaaatatagtaattaaattctt 2741512  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 9322380 - 9322343
Alignment:
Q  100 tgtaaaataattgtacacccacaaaatatactaattaa 137  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  9322380 tgtaaaataattgtacactaacaaaatatactaattaa 9322343  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 9334341 - 9334304
Alignment:
Q  100 tgtaaaataattgtacacccacaaaatatactaattaa 137  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  9334341 tgtaaaataattgtacactaacaaaatatactaattaa 9334304  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 9376859 - 9376822
Alignment:
Q  100 tgtaaaataattgtacacccacaaaatatactaattaa 137  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  9376859 tgtaaaataattgtacactaacaaaatatactaattaa 9376822  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 28016579 - 28016618
Alignment:
Q  17 gtacaattattttacacattcattcaatgatgtgctgtca 56  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  28016579 gtacaattattttacacatacattcaatgatgtgttgtca 28016618  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 45495587 - 45495546
Alignment:
Q  97 atgtgtaaaataattgtacacccacaaaatatactaattaaa 138  Q
    |||||||||||||||||||||| ||||| ||||| |||||||    
T  45495587 atgtgtaaaataattgtacaccgacaaagtataccaattaaa 45495546  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 30021554 - 30021510
Alignment:
Q  97 atgtgtaaaataattgtacacccacaaaatatactaattaaactc 141  Q
    |||||||||||||||||||| | | | ||||||||||||||||||    
T  30021554 atgtgtaaaataattgtacatcgatagaatatactaattaaactc 30021510  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 13292794 - 13292822
Alignment:
Q  21 aattattttacacattcattcaatgatgt 49  Q
    |||||||||||||||||||||||||||||    
T  13292794 aattattttacacattcattcaatgatgt 13292822  T

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