View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_65 (Length: 204)
Name: NF5229_low_65
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 19587684 - 19587830
Alignment:
| Q |
39 |
gagagaaagaatgctggaacaaaactcaacaacacacggaagagaaagatgcatgaaatcaagaaattagatgaaaaagaacgcagactcggaattttca |
138 |
Q |
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| T |
19587684 |
gagagaaagaatgctggaacaaaactcaacaacacacggaagagaaagatgcatgaaatcaagaaattagatgaaaaagaacgcagactcggaattttca |
19587783 |
T |
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| Q |
139 |
acaaagcaatagagctatctattctatgccaatcaaaaactgcaatc |
185 |
Q |
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| T |
19587784 |
acaaagcaatagagctatctattctatgccaatcaaaaactgcaatc |
19587830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 12895243 - 12895300
Alignment:
| Q |
125 |
actcggaattttcaacaaagcaatagagctatctattctatgccaatcaaaaactgca |
182 |
Q |
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| T |
12895243 |
actcggaattttcaacaaagcaatagagctatctattctatgcgaatcagaaactgca |
12895300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 12895169 - 12895207
Alignment:
| Q |
66 |
aacaacacacggaagagaaagatgcatgaaatcaagaaa |
104 |
Q |
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| T |
12895169 |
aacaacacacggaagagaaagaaggatgaaatcaagaaa |
12895207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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