View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5229_low_66 (Length: 201)
Name: NF5229_low_66
Description: NF5229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5229_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 34626150 - 34625971
Alignment:
| Q |
13 |
attatactacaattcaagtttgataaattattatcagccaagtctattacaatttgaacagaatcagtttggaaacaattcaagctatttcttctcttca |
112 |
Q |
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| T |
34626150 |
attatactacaattcaagtttgataaattattatcagccaagtctattacaatttgaacagaatcagtttggaaacaattcaagctatttcttctcttca |
34626051 |
T |
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| Q |
113 |
atgccttgtctaaatagtt---------cagacaacatcaacaactcagtttcaaaatttagttctcctttggtgaatga |
183 |
Q |
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| T |
34626050 |
atgccttgtctaaatagttcagaattttcagacaacatcaacaactcagtttcaaaatttagttctcctttggtgaatga |
34625971 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 51044955 - 51045009
Alignment:
| Q |
58 |
attacaatttgaacagaatcagtttggaaacaattcaagctatttcttctcttca |
112 |
Q |
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| T |
51044955 |
attacaatttgaactgaaccaatttggaaccaattcaagctatttcttctcttca |
51045009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 44667105 - 44667214
Alignment:
| Q |
19 |
ctacaattcaagtttgataaattattatcagccaagtctattacaatttgaacaga---atcagtttggaaacaattcaagctatttcttctcttcaatg |
115 |
Q |
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|||||||| |||| |||| |||||||||| |||||||| |||||||||||||| | |||||||||| |||||| | ||| || |||||||||||| |
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| T |
44667105 |
ctacaatttaagtgtgatctattattatcactcaagtctaagacaatttgaacagaaccaccagtttggaatcaattccaactaatttttctcttcaatg |
44667204 |
T |
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| Q |
116 |
ccttgtctaa |
125 |
Q |
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| T |
44667205 |
ccttttctaa |
44667214 |
T |
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