View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5230-Insertion-2 (Length: 1010)
Name: NF5230-Insertion-2
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5230-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 729; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 64 - 1004
Target Start/End: Complemental strand, 31762063 - 31761106
Alignment:
| Q |
64 |
ttattattcaaacaacgtatatnnnnnnntagaagttaaattgttgaaggaaaaataaaattagtttctaaaggaacataaattaattcattatttttgt |
163 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31762063 |
ttattattcaaacaacgtatatgaaaaaataaaagttaaattgttgaaggaaaaataaaattagtttctaaaggaacataaattaattcattatttttgt |
31761964 |
T |
|
| Q |
164 |
agtagtataactatatatttgaacaaggcaatatctaatatgatgaatagtggatattttactcttctattgatgtttttatatctaataatcatgtcaa |
263 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761963 |
agtagtataactatatatttgagcaaggcaatatctaatatga---atagtggatattttactcttctattgatgtttttatatctaataatcatgtcaa |
31761867 |
T |
|
| Q |
264 |
acaattaggtatcaatggtgcaagtttgcaagaaaagtagttgggttcatgttgtactcatgcaagagacttaaacttttttgtatactagatctctata |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31761866 |
acaattaggtatcaatggtgcaagtttgcaagaaaagtagttgggttcatgttgtactcatgcaagagacttaaacttttttgtatact----ctctata |
31761771 |
T |
|
| Q |
364 |
gaattagatgtaaaaatacaacaataattttttgaaggaaaaatacaacaataattaaaaagcgataattttgtaacatactaaaatacagatccttct- |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
31761770 |
gaattagatgtaaaaatacaacaataattttttgaaggaaaaatacaacaataattaaaaagcgataattttgtaacatgctaaaatatagatccttctt |
31761671 |
T |
|
| Q |
463 |
--------------------atattaatttcaaacttattatgagttaaattatacgtgcatcatattcatgtcacaaatacatatgaataatttccatt |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
31761670 |
tattcaaaatttatatttctatattaatttcaaacttattatgagttaaattataagtgcatcatattcatgtcacaaatacatatgaacaatttccatt |
31761571 |
T |
|
| Q |
543 |
atagggttgtgatggatcggttctgctagatgatacccctaccttcattggtgagaagactgcatttccaaatatcaattcaattagaggttttgaggtc |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761570 |
atagggttgtgatggatcggttctgctagatgatacccctaccttcattggtgagaagactgcatttccaaatatcaattcaattagaggttttgaggtt |
31761471 |
T |
|
| Q |
643 |
gttgatcaaatcaaagctgcagttaccaaagcttgcaaacgcgatgtcgtatcatgcgccgatattttagctatagctgctcgagactctgttgccattg |
742 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761470 |
gttgatcaaattaaagaagcagttaccaaagcttgcaaacgcgatgtcgtatcatgcgccgatattttagctatagctgctcgagactctgttgccattg |
31761371 |
T |
|
| Q |
743 |
taagtctttcaaatatttttcacttctaaacaaggttttaatttgtgtaaccacggttgtttcagaaaatataaaagattttaaggtc----tataaccg |
838 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
31761370 |
taagtctttcaaatatttttcacttctaaacaaggttttaatttgtgtaaccacagttgtttcagaaaatataaaagattttgaggtctatatataaccg |
31761271 |
T |
|
| Q |
839 |
caattttgaatacatagactgcatttaaccgcgatcaaaactgaaatttcgactactatannnnnnnnattggtaaatttggagtagtatatataaccct |
938 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||| |
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| T |
31761270 |
caattttgaatacatagactgcatttaaccg-gatcaaaactgaaatttcgagtagtatattttttttattggtgaatttggagtagtatatataaccct |
31761172 |
T |
|
| Q |
939 |
agaaactaagaaattttgctttcatcaattaacagctgggtggtaagcaatattggtaccaagtgt |
1004 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31761171 |
agcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgt |
31761106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 545 - 767
Target Start/End: Complemental strand, 31768404 - 31768182
Alignment:
| Q |
545 |
agggttgtgatggatcggttctgctagatgatacccctaccttcattggtgagaagactgcatttccaaatatcaattcaattagaggttttgaggtcgt |
644 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
31768404 |
agggttgtgatggatcggttctactagatgacacccctaccttcattggtgagaagactgcatttccaaatatcaattcaattagaggttttgaggttgt |
31768305 |
T |
|
| Q |
645 |
tgatcaaatcaaagctgcagttaccaaagcttgcaaacgcgatgtcgtatcatgcgccgatattttagctatagctgctcgagactctgttgccattgta |
744 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31768304 |
tgatcaaatcaaagctgcagttaccaaagcttgcaaacgcgatgtcgtatcatgtgccgatattttagctatagcagctcgagactctgttgccattgta |
31768205 |
T |
|
| Q |
745 |
agtctttcaaatatttttcactt |
767 |
Q |
| |
|
|||||||| |||||||| ||||| |
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|
| T |
31768204 |
agtctttccaatattttgcactt |
31768182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 608 - 877
Target Start/End: Original strand, 31749183 - 31749463
Alignment:
| Q |
608 |
ttccaaatatcaattcaattagaggttttgaggtcgttgatcaaatcaaagctgcagttaccaaagcttgcaaacgcgatgtcgtatcatgcgccgatat |
707 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||| |
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|
| T |
31749183 |
ttccaaatatcaattcaattagaagttttgaggtcgttgatcaaatcaaagctgcagttaccaaagcttgcaaacgtgatgtagtatcatgtgcagatat |
31749282 |
T |
|
| Q |
708 |
tttagctatagctgctcgagactctgttgccattgtaagtctttcaaatatttttcacttctaaacaaggttttaatttgtgtaaccac----ggttgtt |
803 |
Q |
| |
|
|||||||||||| |||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||| ||||||| ||||| |
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|
| T |
31749283 |
tttagctatagcagctcgagattccgttgccatagtaagtctttccaatattttgcacttctaaacaaggttttaaattgcataaccacaatatattgtt |
31749382 |
T |
|
| Q |
804 |
tcaga-------aaatataaaagattttaaggtctataaccgcaattttgaatacatagactgcatttaaccgcgatcaaa |
877 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31749383 |
gcagacttgcagcaatataaaagattttgaggtctataaccgcaattttgaatacatcgactgcatttaaccgcgatcaaa |
31749463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 543 - 758
Target Start/End: Complemental strand, 31754094 - 31753879
Alignment:
| Q |
543 |
atagggttgtgatggatcggttctgctagatgatacccctaccttcattggtgagaagactgcatttccaaatatcaattcaattagaggttttgaggtc |
642 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
31754094 |
atagggttgtgatggatcaattctactagatgacacccctaccttcattggtgagaagactgcaattccaaatatcaattcacttagaggttttgaggtt |
31753995 |
T |
|
| Q |
643 |
gttgatcaaatcaaagctgcagttaccaaagcttgcaaacgcgatgtcgtatcatgcgccgatattttagctatagctgctcgagactctgttgccattg |
742 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||| ||||| || ||||||| || ||||| ||||||||||| |||||||| ||||||||||| | |
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|
| T |
31753994 |
gttgatcaaattaaagccgcagttgacaaagcttgtaaacgtccgatcatatcatgtgcagatatcttagctatagcagctcgagattctgttgccatag |
31753895 |
T |
|
| Q |
743 |
taagtctttcaaatat |
758 |
Q |
| |
|
||||| |||| ||||| |
|
|
| T |
31753894 |
taagtatttccaatat |
31753879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 914 - 1004
Target Start/End: Original strand, 31749520 - 31749610
Alignment:
| Q |
914 |
aatttggagtagtatatataaccctagaaactaagaaattttgctttcatcaattaacagctgggtggtaagcaatattggtaccaagtgt |
1004 |
Q |
| |
|
||||| || |||| ||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31749520 |
aatttcgaatagtgtatgtaacactagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgt |
31749610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 459 - 546
Target Start/End: Complemental strand, 31754213 - 31754126
Alignment:
| Q |
459 |
ttctatattaatttcaaacttattatgagttaaattatacgtgcatcatattcatgtcacaaatacatatgaataatttccattatag |
546 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31754213 |
ttctatattaatttcaaacttattttgagttcaattatagttgaatcatattcatgtcacatttacatatgaataatttccattatag |
31754126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 31768615 - 31768558
Alignment:
| Q |
10 |
tgctacgtttgcatttccatgactgctttgtaaatgtaagttagttgattacatttat |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31768615 |
tgctacgtttgcatttccatgactgctttgttaatgtaagttagttgattacatttat |
31768558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 544 - 747
Target Start/End: Complemental strand, 31798420 - 31798217
Alignment:
| Q |
544 |
tagggttgtgatggatcggttctgctagatgatacccctaccttcattggtgagaagactgcatttccaaatatcaattcaattagaggttttgaggtcg |
643 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| | |||| ||| |||||||| || |||||||||| |||||||| ||||| ||| || | |
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|
| T |
31798420 |
tagggttgtgatggatcagtcctgctagatgataccccaaatttcactggggagaagacagctcttccaaatattaattcaatcagaggattttctgtgg |
31798321 |
T |
|
| Q |
644 |
ttgatcaaatcaaagctgcagttaccaaagcttgcaaacgcgatgtcgtatcatgcgccgatattttagctatagctgctcgagactctgttgccattgt |
743 |
Q |
| |
|
||||| |||||||||| || ||| |||| |||||| || ||| ||||| || || ||||||||||| | ||| ||||| || ||||| ||||| || |
|
|
| T |
31798320 |
ttgatgaaatcaaagcagctgttgataaagtatgcaaaggccctgttgtatcttgtgctgatattttagccacagcagctcgtgattctgtagccatagt |
31798221 |
T |
|
| Q |
744 |
aagt |
747 |
Q |
| |
|
|||| |
|
|
| T |
31798220 |
aagt |
31798217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 963 - 1004
Target Start/End: Complemental strand, 31767900 - 31767859
Alignment:
| Q |
963 |
tcaattaacagctgggtggtaagcaatattggtaccaagtgt |
1004 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31767900 |
tcaattaacagttgggtggtaagcaatattggtaccaagtgt |
31767859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 31762283 - 31762242
Alignment:
| Q |
10 |
tgctacgtttgcatttccatgactgctttgtaaatgtaagtt |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
31762283 |
tgctacgtttgcatttccatgactgctttgttaacgtaagtt |
31762242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 31754603 - 31754573
Alignment:
| Q |
10 |
tgctacgtttgcatttccatgactgctttgt |
40 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31754603 |
tgctacgtttgcatttccatgactgctttgt |
31754573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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