View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5230-Insertion-3 (Length: 775)

Name: NF5230-Insertion-3
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5230-Insertion-3
NF5230-Insertion-3
[»] chr7 (1 HSPs)
chr7 (660-775)||(43103836-43103951)
[»] chr5 (3 HSPs)
chr5 (660-775)||(27364598-27364712)
chr5 (660-697)||(27365640-27365677)
chr5 (660-697)||(22778251-22778288)
[»] chr4 (1 HSPs)
chr4 (660-774)||(1866168-1866282)
[»] chr1 (5 HSPs)
chr1 (660-774)||(10920063-10920177)
chr1 (660-774)||(23818199-23818313)
chr1 (667-753)||(16145326-16145412)
chr1 (658-696)||(28762445-28762483)
chr1 (660-697)||(4929814-4929851)
[»] chr6 (2 HSPs)
chr6 (718-775)||(2127740-2127797)
chr6 (660-697)||(1859798-1859835)
[»] chr2 (2 HSPs)
chr2 (660-708)||(3322916-3322964)
chr2 (660-697)||(13913466-13913503)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 660 - 775
Target Start/End: Original strand, 43103836 - 43103951
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 759  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  43103836 tatcaagtgagaggacattttataatgagagatgagagcattaaattaggaccctaggatcaaattgaaaggtggagatgatatttcacgtaatgtggtg 43103935  T
Q  760 tatgactacctgattg 775  Q
    ||||||||||||||||    
T  43103936 tatgactacctgattg 43103951  T

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Target: chr5 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 660 - 775
Target Start/End: Original strand, 27364598 - 27364712
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 759  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  27364598 tatcaagtgagagtacattttataatgagagatgagagcattaaattaggaccctagg-tcaaattgaaaggtggagatgatatttcacttaatgtggtg 27364696  T
Q  760 tatgactacctgattg 775  Q
    ||||||||||||||||    
T  27364697 tatgactacctgattg 27364712  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 27365677 - 27365640
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagag 697  Q
    |||||||||||||||||||||||||||| |||||||||    
T  27365677 tatcaagtgagaggacattttataatgagagatgagag 27365640  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 22778251 - 22778288
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagag 697  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  22778251 tatcaagtgagaggacatcttataatgagagatgagag 22778288  T

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Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 660 - 774
Target Start/End: Complemental strand, 1866282 - 1866168
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 759  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  1866282 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 1866183  T
Q  760 tatgactacctgatt 774  Q
    | |||||||||||||    
T  1866182 tgtgactacctgatt 1866168  T

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Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 660 - 774
Target Start/End: Complemental strand, 10920177 - 10920063
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 759  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  10920177 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 10920078  T
Q  760 tatgactacctgatt 774  Q
    | |||||||||||||    
T  10920077 tgtgactacctgatt 10920063  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 660 - 774
Target Start/End: Complemental strand, 23818313 - 23818199
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 759  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  23818313 tatcaagtgagaggatattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 23818214  T
Q  760 tatgactacctgatt 774  Q
    | |||||||||||||    
T  23818213 tgtgactacctgatt 23818199  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 667 - 753
Target Start/End: Original strand, 16145326 - 16145412
Alignment:
Q  667 tgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaat 753  Q
    ||||||||  ||||||||| | ||||||||||||||| |||| |||||||||| ||  | || ||||||||||||||||||||||||    
T  16145326 tgagaggaggttttataataagagatgagagcattaagttagcaccctaagattaatctgaatggtggagatgatatttcacttaat 16145412  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 696
Target Start/End: Original strand, 28762445 - 28762483
Alignment:
Q  658 tctatcaagtgagaggacattttataatgaaagatgaga 696  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  28762445 tctatcaagtgagaggacattttagaatgagagatgaga 28762483  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Original strand, 4929814 - 4929851
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagag 697  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  4929814 tatcaagtgagaggacatcttataatgagagatgagag 4929851  T

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Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 718 - 775
Target Start/End: Complemental strand, 2127797 - 2127740
Alignment:
Q  718 atcaaattaaaaggtggagatgatatttcacttaatgtggtgtatgactacctgattg 775  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  2127797 atcaaattgaaatgtgaagatgatatttcacttaatgtggtgtatgactacctgattg 2127740  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 1859835 - 1859798
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagag 697  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  1859835 tatcaagtgagaggacattttaaaatgagagatgagag 1859798  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 708
Target Start/End: Original strand, 3322916 - 3322964
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagagcattaaattag 708  Q
    |||||||||||||||||||||| ||||| |||||||||  |||||||||    
T  3322916 tatcaagtgagaggacattttaaaatgagagatgagagagttaaattag 3322964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 697
Target Start/End: Complemental strand, 13913503 - 13913466
Alignment:
Q  660 tatcaagtgagaggacattttataatgaaagatgagag 697  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  13913503 tatcaagtgagaggacatcttataatgagagatgagag 13913466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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