View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5230-Insertion-4 (Length: 748)
Name: NF5230-Insertion-4
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5230-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 7 - 525
Target Start/End: Original strand, 45955442 - 45955980
Alignment:
| Q |
7 |
aataaaatcatttattaattataagataaacaaaatgcaccatccatctaatgtgaggaaaattcatgcttcagattgtagacctataaaataa------ |
100 |
Q |
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| T |
45955442 |
aataaaatcatttattaattataagataaagaaaatgcaccatccatctaatgtgaggaaaattcatgcttcagattgtagacctataaaataaggacat |
45955541 |
T |
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| Q |
101 |
---------------tggctaagataatgtcacaagctaagacaatatacatcggaaatttagaaaggaagcgttgttaaggcttttacttacaattttg |
185 |
Q |
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| T |
45955542 |
acacacacaaattaatggctaagataatgtcacaagctaagacaatatacatcggaaatttagaaaggaagcgttgtta-ggcttttacttacaattttg |
45955640 |
T |
|
| Q |
186 |
gttcccatattttaaaaccattagtttaaattcataagatttttgtatttaaaaatggtgaaactaagtttttcattggttttctggtattactttttag |
285 |
Q |
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| T |
45955641 |
gttcccatattttaaaaccattagtttaaattcataagatttttgtatttaaaaatggtgaaactaagtttttcattggttttctggtattactttttag |
45955740 |
T |
|
| Q |
286 |
gggtggttttcttgtattttgttgagccagtatcactccacaatatcatgttttatccaacgtcatttacaatatgtcaaatgacccattttatgcacaa |
385 |
Q |
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| T |
45955741 |
gggtggttttcttgtattttgttgagccaggatcactccacaatatcatgttttatccaacgtcatttacaatatgtcaaatgacctattttatgcacaa |
45955840 |
T |
|
| Q |
386 |
aaatctgatggagaggccaaaacagattgattctaaaatgaaaggaccaatttcgtgaaaggaatcaagtatttgatttttacaactttttataacataa |
485 |
Q |
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| T |
45955841 |
aaatctgatggagaggccaaaactgattgattctaaaatgaaaggatcaatttcgtgaaaggaatcaagtatttgatttttacaactttttataacataa |
45955940 |
T |
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| Q |
486 |
tttttcagctttagataaaaggttaaattaaatgttcttc |
525 |
Q |
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| T |
45955941 |
tttttaagctttagataaaaggttaaattaaatgttcttc |
45955980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 600 - 748
Target Start/End: Original strand, 45956069 - 45956217
Alignment:
| Q |
600 |
gtgtggaaaaagaagggaaaatcagtcacgttttaatgtgtgcattgttatgttgatcaacaatggtgtttgaaagagaggaatcgaatgacaaagtaaa |
699 |
Q |
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| T |
45956069 |
gtgtgaaaaaagaagggaaaatcagtcacgttttaatgtgtgcattgttatgttgatcaacaatggtgtttgaaagagaggaatcgaatgacaaagtaaa |
45956168 |
T |
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| Q |
700 |
ttagtctcccaaaaccttaataatttctcaaagatgttgtagtgcactt |
748 |
Q |
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| T |
45956169 |
ttagtctcccaaaaccttaataatttctcaaagatgttgtagtgcactt |
45956217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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