View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5230-Insertion-5 (Length: 503)
Name: NF5230-Insertion-5
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5230-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Complemental strand, 35836634 - 35836142
Alignment:
| Q |
8 |
gacacaacaacaattaatggctgcacgttcctctcttatgtatgctcaacagcttcaacagcagcaagccttgcaaagccaacttggtatgaattccagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35836634 |
gacacaacaacaattaatggctgcacgttcctctcttatgtatgctcaacagcttcaacagcagcaagccttgcaaagccaacttggtatgaattccagt |
35836535 |
T |
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| Q |
108 |
ggaagtcaaggccttcacatgttgcatagtgaaggggctaatgttggaggcaattcatctctaggggctggaggttttcctgattttggccgtagctcag |
207 |
Q |
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| T |
35836534 |
ggaagtcaaggccttcacatgttgcatagtgaaggggctaatgttggaggcaattcatctctaggggctgg---ttttcctgattttggccgtagctcag |
35836438 |
T |
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| Q |
208 |
ccggtgatggtttgcacggcagtggtaagcaagacattggaagcactgatggccgcggtggaagctctagtggtcactctggtgatggcggcgaaacact |
307 |
Q |
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| T |
35836437 |
ccggtgatggtttgcacggcagtggtaagcaagacattggaagcactgatggccgcggtggaagctctagtggtcactctggtgatggcggcgaaacact |
35836338 |
T |
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| Q |
308 |
ttacctgaaatcttctggtgatgggaattagttaagcaagaatggtaaaactaattagttcctggcctttttagttaggaggattaggcaatgaacatta |
407 |
Q |
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| T |
35836337 |
ttacctgaaatcttctggtgatgggaattagttaagcaagaatggtaaaactaattagttcctggcctttttagttaggaggattaggcaatgaacatta |
35836238 |
T |
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| Q |
408 |
agttaagtaggtgaaggataagcttgcttattagacttcagatgttatgttttgtctgttttatgtttcattaaaaggcaatgaatcaaaacgttg |
503 |
Q |
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| T |
35836237 |
agttaagtaggtgaaggataagcttgcttattagacttcagatgttatgttttgtctgttttatgtttcattaaaaggcaatgaatcaaaacgttg |
35836142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 44549993 - 44549866
Alignment:
| Q |
8 |
gacacaacaacaattaatggctgcacgttcctctcttatgtatgctcaacagcttcaacagcagcaagccttgcaaagccaacttggtatgaattccagt |
107 |
Q |
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||||||||||||| || ||||| | ||||||| || ||||||||||||| | ||||||| |||||||||||| | ||||||||||||| |||| || |
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| T |
44549993 |
gacacaacaacaactattggcttc--gttcctccgttttgtatgctcaacatttccaacagcggcaagccttgcagaaccaacttggtatgtattcaaga |
44549896 |
T |
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| Q |
108 |
ggaagtcaaggccttcacatgttgcatagt |
137 |
Q |
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| T |
44549895 |
ggaagtcaaggccttcacatgttacatagt |
44549866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 44549743 - 44549679
Alignment:
| Q |
315 |
aaatcttctggtgatgggaattagttaagcaagaatggtaaaactaattagttcctggccttttt |
379 |
Q |
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| T |
44549743 |
aaatcttctggtgatgggaattaattaagcaagaatcgttatactaattaactactggccttttt |
44549679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 47688208 - 47688260
Alignment:
| Q |
287 |
tggtgatggcggcgaaacactttacctgaaatcttctggtgatgggaattagt |
339 |
Q |
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| T |
47688208 |
tggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaactagt |
47688260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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