View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5230_high_1 (Length: 422)
Name: NF5230_high_1
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5230_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 31898730 - 31898310
Alignment:
| Q |
1 |
atttgtatggaatattaattctacaataattctatcaaaggtatttatactcaatggtgtaacagactcttgcttttcagtttcaactctttgaacagaa |
100 |
Q |
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| T |
31898730 |
atttgtatggaatattaattctacaataattctatcaaaggtatttatactcaatggtgtaacagactcttgcttttcagtttcaactttttgaacaaaa |
31898631 |
T |
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| Q |
101 |
tgatttatcatatgtgctggtgtcgcgtcaaatacatttcggacatcagacacaccttcaatttaaagaatcggtgctacatcgtttatagtcacatgag |
200 |
Q |
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| T |
31898630 |
tgatttgtcatatgtgttggtgttgcgtcaaacacatttcgaacatcagacacaccttcaatctaaagaatcgatgctacatcgtttatagtcacatgag |
31898531 |
T |
|
| Q |
201 |
agatggtcttgttttcctcttcatgttttttcggtctaccatttgcttcatacttagaccaagtacaatattgaatcttatttat--------------- |
285 |
Q |
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| T |
31898530 |
agatggtcttgttttcctcttcatgttttttcggtctaccatttgcttcatacttaaaccaagtacaatattgaatcttatctatagaaatcctagtgtc |
31898431 |
T |
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| Q |
286 |
aggatttggatgcaacatcctacacaatatcttcctaacattaagcagttagcacacttaaactctgcttgcttatcttcctatacatttccatcaaatt |
385 |
Q |
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| T |
31898430 |
aggatttggatgcaacatcctacacaa-atcttccaaacattaagcaattagcacacttaaactctgcttgcttatcttcctatacatttccatcaaatt |
31898332 |
T |
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| Q |
386 |
tgagtcattataaggttcataa |
407 |
Q |
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| T |
31898331 |
tgagtcattaaaaggttcataa |
31898310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 31893033 - 31892951
Alignment:
| Q |
199 |
agagatggtcttgttttcctcttcatgttttttcggtctaccatttgcttcatacttagaccaagtacaatattgaatcttat |
281 |
Q |
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| T |
31893033 |
agagatagtcttcttttcctcttcacgttttttcggtctaccatttgatccatgcttaaaccaagaacaatgtttaatcttat |
31892951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 407
Target Start/End: Complemental strand, 31892870 - 31892802
Alignment:
| Q |
340 |
cacttaaactctgcttg-cttatcttcctatacatttccatcaaatttgagtcattataaggttcataa |
407 |
Q |
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| T |
31892870 |
cacttaaactctgctttacttatcttcctatacatctccatcaaattggagtcattgaaaggtacataa |
31892802 |
T |
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