View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5230_high_2 (Length: 410)
Name: NF5230_high_2
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5230_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 135 - 396
Target Start/End: Complemental strand, 45036752 - 45036492
Alignment:
| Q |
135 |
caagtcagttttgagaagaaaaattattatatcnnnnnnnnnnnaattagaaaaattgtagtatcaacccatgccatggtcaacaacatcaccatagatc |
234 |
Q |
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| T |
45036752 |
caagtcagttttgagaagaaaaattattatatctttttttttttaattagaaaaattgtagtatcaacccatgccatggtcaacaacatcaccatagatc |
45036653 |
T |
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| Q |
235 |
ttaagtccaaaataatttacctacttagaacacaagttattagtcccttcgaaattcctcacttaatcaaagttattatttatattaggtaaaattaagt |
334 |
Q |
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| T |
45036652 |
t-aagtccaaaataatttacctacttagaacacaagttattagtcccttcgaaattcctcacttagtcaaagttattatttttattaggtaaaattaagt |
45036554 |
T |
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| Q |
335 |
tttggttttttcatctagaactagaaatgcaagtaacacgtcatatgtatggatctcaagtg |
396 |
Q |
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| T |
45036553 |
tttggtatttttatctagaactagaaatacaagtgacacgtcatatgtatggatctcaagtg |
45036492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 45036872 - 45036771
Alignment:
| Q |
39 |
atacactaacttgattccattttctcttaagaagccnnnnnnnnntcaaacaattggtgggtttaagaatcaaaccagatacacaccgtaaggtcccaag |
138 |
Q |
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| T |
45036872 |
atacactaacttgattccattttctcttaagaagccaaaaaaa--tcaaacaattggtgggtttaagaatcaaaccagatacacaccgtaaggtcccaag |
45036775 |
T |
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| Q |
139 |
tcag |
142 |
Q |
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| T |
45036774 |
tcag |
45036771 |
T |
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