View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5230_high_3 (Length: 370)
Name: NF5230_high_3
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5230_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 4 - 353
Target Start/End: Complemental strand, 47015191 - 47014842
Alignment:
| Q |
4 |
atgtcgaagaaaataaaacattgcttctgaaatatgagacacatattgcgcctcccatcacaagccagttgaattctgatagcagaacaaactcatcgcc |
103 |
Q |
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| T |
47015191 |
atgtccaaaaaaataaaacattgcttctgaaatatgagacacatattgcgcctcccatcacaagccagttgaattctgatagcggaacaaactcaccgcc |
47015092 |
T |
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| Q |
104 |
atcaagatcttcttcctgtatttgatagttcaatcatccaactgacctcatcacatgtgttggtgattcaatctcatataatgttgaccatactgttatt |
203 |
Q |
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| T |
47015091 |
atcaagatcttcttcctgtatttgatagttcaatcatccaactgacctcatcacatgtgttggtgattcaatctcatataatgttgaccatactgttatt |
47014992 |
T |
|
| Q |
204 |
agccccttttcatagtgcccaaatatttaatcaaacaaagaggacaaggctttcaacaaatctgcgaccaaccacatcgtgtcgtatctcctttgtttct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47014991 |
agccccttttcatagtgcccaaatatttaatcaaacaaagaggacaaggctttcaacaaatctgcgaccaaccacatcgtgtcgtatctcctttgtttct |
47014892 |
T |
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| Q |
304 |
atttgtccagccaaactgttagcctttaacttcaatactgagagagatat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47014891 |
atttgtccagccaaactgttagcctttaacttcaatactgatagagatat |
47014842 |
T |
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