View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5230_high_6 (Length: 260)
Name: NF5230_high_6
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5230_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 45955440 - 45955206
Alignment:
| Q |
19 |
ttattattat-attctaaaaaaggtgttaaaagatggagggaaatgaaaggctgtgaattgaagggaagtgaggtggaggtaagtcctagtcttatcgca |
117 |
Q |
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| T |
45955440 |
ttattattattattctaaaaaaggtgttaaaagatggagggaaatgaaaggctgtgaattgaagggaagtgaggtggaggtaagtcctagtcttatcgca |
45955341 |
T |
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| Q |
118 |
acataataagaggaaatgaaacacacttcaaacttcataattaatttcatcctatacacacctcacaaccaaacatggcaagattggtggcactccaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45955340 |
acataataagaggaaatgaaacacacttcaaacttcataattaatttcatcctatacacacctcacaaccaaacatggcaagattggtggcactccaaca |
45955241 |
T |
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| Q |
218 |
gaatcaactatctttccctcctttagcttcttctc |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
45955240 |
gaatcaactatctttccctcctttagcttcttctc |
45955206 |
T |
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