View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5230_low_4 (Length: 315)

Name: NF5230_low_4
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5230_low_4
NF5230_low_4
[»] chr1 (10 HSPs)
chr1 (1-305)||(48585492-48585796)
chr1 (1-305)||(48640065-48640369)
chr1 (12-125)||(48618046-48618159)
chr1 (1-125)||(48661717-48661841)
chr1 (1-125)||(48653285-48653409)
chr1 (1-123)||(11547396-11547518)
chr1 (65-127)||(48667376-48667438)
chr1 (1-125)||(48629031-48629155)
chr1 (199-274)||(48653483-48653558)
chr1 (198-260)||(48661896-48661958)
[»] chr3 (1 HSPs)
chr3 (199-297)||(19665230-19665328)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 48585492 - 48585796
Alignment:
Q  1 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  48585492 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggaaaaaaataattgtttatgatacatgaaaatggtttgtttaaatca 48585591  T
Q  101 gcatgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacgatcaccgtctggta 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585592 gcatgattcttgatcatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacgatcaccgtctggta 48585691  T
Q  201 aaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccgt 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585692 aaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccgt 48585791  T
Q  301 ctctg 305  Q
    |||||    
T  48585792 ctctg 48585796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 48640065 - 48640369
Alignment:
Q  1 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 100  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||       || |||||||||||||||||||||||||||||| ||||     
T  48640065 ccatgacaaaacagaaggaatattgtgttcattagcaacgtcacaaacccatggaaaaaaatagttgtttatgatacatgaaaatggtttgtttgaatcg 48640164  T
Q  101 gcatgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacgatcaccgtctggta 200  Q
    ||||||||||| || ||||| |||||| || |||| ||||||||||||||||||||  |||||||||||||||||||||| |||| |   || |||||||    
T  48640165 gcatgattctttatcatttgtgaaataaagtgtctgccagcaacctcaatttcagcatagtgctgaagagctctgaaggccgaaccactgccatctggta 48640264  T
Q  201 aaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccgt 300  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640265 aaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagccgt 48640364  T
Q  301 ctctg 305  Q
    |||||    
T  48640365 ctctg 48640369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 48618159 - 48618046
Alignment:
Q  12 cagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 111  Q
    |||||||||||   ||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48618159 cagaaggaataccatgttcatcagctacatcacaaacccatggaacaaaaggattgtttatgatacatgaaaatggtttgtttgaatcagcatgattctt 48618060  T
Q  112 gataatttgagaaa 125  Q
    ||| ||||||||||    
T  48618059 gatcatttgagaaa 48618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 48661717 - 48661841
Alignment:
Q  1 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 100  Q
    |||| ||||| ||||||||||||||||||||  ||| | |||||||||||||||         ||||||||||| |||||||| |||||||||| |||||    
T  48661717 ccataataaagcagaaggaatattgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttgtttgaatca 48661816  T
Q  101 gcatgattcttgataatttgagaaa 125  Q
    |||||||||||||| ||||||||||    
T  48661817 gcatgattcttgatcatttgagaaa 48661841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 48653285 - 48653409
Alignment:
Q  1 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 100  Q
    |||| |||||||||||||||||   ||||||| ||| |||||||||||||| ||         ||| ||||||| |||||||| |||||||||| | |||    
T  48653285 ccataataaaacagaaggaataccatgttcatcagctacatcacaaacccaaggaagaaagggattatttatgagacatgaaattggtttgtttgactca 48653384  T
Q  101 gcatgattcttgataatttgagaaa 125  Q
    |||||||||||||| ||||||||||    
T  48653385 gcatgattcttgatcatttgagaaa 48653409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 11547396 - 11547518
Alignment:
Q  1 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 100  Q
    |||| |||||||||||||||||   ||||||| ||| |||||||||||||| ||         ||||||||||||||| |||| |||||||||| | |||    
T  11547396 ccataataaaacagaaggaataccatgttcatgagctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactca 11547495  T
Q  101 gcatgattcttgataatttgaga 123  Q
     ||||||||||||| ||||||||    
T  11547496 acatgattcttgatcatttgaga 11547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 48667376 - 48667438
Alignment:
Q  65 ttgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaata 127  Q
    |||||||| |||||||||| |||||||||  |||||||||||||||| || ||||||||||||    
T  48667376 ttgtttataatacatgaaattggtttgttcgaatcagcatgattctttatcatttgagaaata 48667438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 48629031 - 48629155
Alignment:
Q  1 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 100  Q
    |||||||||| |||||||||| |  ||||||  ||| ||||| |||||||||||         ||||| |||||||||||||| ||||||  || |||||    
T  48629031 ccatgataaagcagaaggaatgtcatgttcaaaagctacatcgcaaacccatggaagaaaaggattgtatatgatacatgaaattggtttacttgaatca 48629130  T
Q  101 gcatgattcttgataatttgagaaa 125  Q
    |||||||||||||| |||| |||||    
T  48629131 gcatgattcttgatcattttagaaa 48629155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 48653483 - 48653558
Alignment:
Q  199 taaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgtta 274  Q
    ||||| ||||||||||||||| |||| ||  | ||||||||||||||||||   | |||| |||||||||||||||    
T  48653483 taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgtta 48653558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 48661896 - 48661958
Alignment:
Q  198 gtaaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgt 260  Q
    |||||| || ||||||||||||||||  || || ||||||||| || ||||||||||||||||    
T  48661896 gtaaactatgatcaaagaactcgaaaatgagagaaccatcacctatcggagttgctaatttgt 48661958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 19665328 - 19665230
Alignment:
Q  199 taaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagc 297  Q
    |||||||||||||||||| | ||||  || || ||||||||| ||||||||   | |||||| | ||||||||||| ||| | |||||| |||||||||    
T  19665328 taaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagc 19665230  T

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