View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5230_low_7 (Length: 241)
Name: NF5230_low_7
Description: NF5230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5230_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 48585502 - 48585277
Alignment:
| Q |
1 |
ttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585502 |
ttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgt |
48585403 |
T |
|
| Q |
101 |
tcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaactcgtcttagaagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
48585402 |
tcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgttcatttccattcctaggtaaacttgtcttagaagag |
48585303 |
T |
|
| Q |
201 |
tttaaggacttgtctaaagtgttttg |
226 |
Q |
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||||||||||| |||||||||||||| |
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| T |
48585302 |
tttaaggacttatctaaagtgttttg |
48585277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 48640075 - 48639850
Alignment:
| Q |
1 |
ttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48640075 |
ttttgtcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacatctttccctacaaatgaagaaccttatattgatgt |
48639976 |
T |
|
| Q |
101 |
tcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaactcgtcttagaagag |
200 |
Q |
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| T |
48639975 |
tcaactcaattcttctatagttcttaaatacaatgaaatctcagactttatacatccttttttcccatttccatttctaggtaaactcatcttagaagag |
48639876 |
T |
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| Q |
201 |
tttaaggacttgtctaaagtgttttg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48639875 |
tttaaggacttgtctaaagtgttttg |
48639850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 48667315 - 48667159
Alignment:
| Q |
8 |
atggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaactc |
107 |
Q |
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|||||||||||| |||||||||||||| || |||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48667315 |
atggactaattctagtgctgttttcaccatttgctatgattatgtccacaaattgttacctttcccttcaaatgaagaaccttatattgatgttcaactc |
48667216 |
T |
|
| Q |
108 |
atcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgt |
164 |
Q |
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| | |||||| |||||||||||||||||||||| ||||| || | |||||||||||| |
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| T |
48667215 |
aactcttctatagttcttaaatacaatgaaatcccagattttatacatcctttttgt |
48667159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 48661726 - 48661555
Alignment:
| Q |
2 |
tttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgtt |
101 |
Q |
| |
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||||| ||||||||||||| ||| ||||| || || |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||||| |
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| T |
48661726 |
tttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggtacctttcccatcaaatgaagaaccttacattgatgtt |
48661627 |
T |
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| Q |
102 |
caactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttcca |
173 |
Q |
| |
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||||||| | |||||| ||||||||||||||| |||||| ||||| | | ||||||||| |||||||||| |
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| T |
48661626 |
caactcaactcttctatagttcttaaatacaacgaaatcccagattatatacatccttttaatccatttcca |
48661555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 226
Target Start/End: Original strand, 48618196 - 48618382
Alignment:
| Q |
37 |
cttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaactcatcccttctagagttcttaaatacaatga |
136 |
Q |
| |
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|||||||||||||| |||||||| | || ||||||| || | |||||||||||||||||||||| | |||| | |||||||||||||||||| |
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| T |
48618196 |
cttactataactatttccacaaactggtacgtttcccttcacaaacagaaccttatattgatgttcaatta---ccttttcaagttcttaaatacaatga |
48618292 |
T |
|
| Q |
137 |
aatctcagatcttgtgcatcctttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttg |
226 |
Q |
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|||| ||||| || | ||||||||| ||| ||||||||| ||||| | |||| |||||||| |||||||| | ||||||||||| ||||| |
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| T |
48618293 |
aatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttg |
48618382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 11547325 - 11547184
Alignment:
| Q |
82 |
aagaaccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttccattcctagg |
181 |
Q |
| |
|
||||||||||||||||||||||| | |||| | ||| |||||||||||||||||| ||||| || | ||||||||| |||||| |||||| ||||| |
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| T |
11547325 |
aagaaccttatattgatgttcaatta---ccttttcaagtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagg |
11547229 |
T |
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| Q |
182 |
taaactcgtcttagaagagtttaaggacttgtctaaagtgttttg |
226 |
Q |
| |
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| |||| |||||||| |||||||| | || |||||||||||||| |
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| T |
11547228 |
gacactcatcttagaacagtttaagaatttatctaaagtgttttg |
11547184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 48629040 - 48628899
Alignment:
| Q |
2 |
tttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgtt |
101 |
Q |
| |
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||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| | |||||| ||| || | ||||||||||||||||||| |
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| T |
48629040 |
tttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaacttgtaccttttccttcagaaacagaaccttatattgatgtt |
48628941 |
T |
|
| Q |
102 |
caactcatcccttctagagttcttaaatacaatgaaatctcagat |
146 |
Q |
| |
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|| | |||| || ||| |||||||||||||||||| ||||| |
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| T |
48628940 |
ca---tttgccttttatagtccttaaatacaatgaaatcccagat |
48628899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 48653272 - 48653128
Alignment:
| Q |
24 |
gctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaactcatcccttctagagttc |
123 |
Q |
| |
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|||||| | ||| ||||||| |||||| |||||||| | || ||||||| ||||||||||||||||||||||||||||| | |||| | ||||| |
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| T |
48653272 |
gctgttcttaccgcttactacaactatttccacaaactggtacgtttcccttcaaatgaagaaccttatattgatgttcaa---ttaccttttgtagttc |
48653176 |
T |
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| Q |
124 |
ttaaatacaatgaaatctcagatcttgtgcatcctttttgtccatttc |
171 |
Q |
| |
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||||| | ||||||||| ||||| || ||||||||||| || |||||| |
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| T |
48653175 |
ttaaacataatgaaatcccagattttctgcatccttttagtacatttc |
48653128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 27228325 - 27228239
Alignment:
| Q |
18 |
tccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaa |
104 |
Q |
| |
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|||| |||||||||| | |||||||||||||| | |||||| | || ||||||| | |||| |||||||||||||||||||||| |
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| T |
27228325 |
tccggtgctgttttcgcagcttactataactattttcacaaactggtacgtttcccttcgaatgcagaaccttatattgatgttcaa |
27228239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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